View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_high_55 (Length: 208)
Name: NF18565_high_55
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_high_55 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 341596 - 341421
Alignment:
| Q |
19 |
agacacgaattaagaaacatatgtctaatggcatggataattggttggggagtcctttggtgaatgtgttagaatatttcaatcaatttttatca--gag |
116 |
Q |
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| T |
341596 |
agacacgaattaagaaacatatgtctaatggcatggataattggttggggtgtcctttggtgaatgtgtt-gaatatttcaatcaatttgtatcatagag |
341498 |
T |
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| Q |
117 |
taaaagcagcgttatccctagtgtcattcttcatcataatgtgtttcttgagaaataaagttgttggagtcgtcctt |
193 |
Q |
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| T |
341497 |
taaaagcagtgttatccctagtgtcattcttcatcataatgtgtttcttgagaaataaagttgttggagtcgtcctt |
341421 |
T |
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