View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_high_56 (Length: 202)
Name: NF18565_high_56
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_high_56 |
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| [»] chr3 (8 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 41985429 - 41985612
Alignment:
| Q |
19 |
actctttttatcttttcatgaatgcagcttttgacgatccattccggaggtggccaaaacgaggtggagtactcaggataatcagacaaaggggaaaccc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41985429 |
actctttttatcttttcatgaatgcagcttttgacgatccattccggaggtggccaaaacgaggtggagtactcaggataatcagacaaaggggaaaccc |
41985528 |
T |
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| Q |
119 |
ggcattgatccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgttgaatgcatcatcactaaagatgacacaat |
202 |
Q |
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| T |
41985529 |
aacattgatccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgtagaatgcatcatcactaaagatgacacaat |
41985612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 48 - 158
Target Start/End: Original strand, 41980684 - 41980794
Alignment:
| Q |
48 |
tttgacgatccattccggaggtggccaaaacgaggtggagtactcaggataatcagacaaaggggaaacccggcattgatccaagtgaaaaacacacatc |
147 |
Q |
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| T |
41980684 |
tttgacgatccattccggaggtggccctaacaagttgtagtattcaggataatcggacaaaggggaaacacgaccttgatccaagtgaaaaatacacatc |
41980783 |
T |
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| Q |
148 |
ccacaaagcat |
158 |
Q |
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||||| ||||| |
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| T |
41980784 |
ccacatagcat |
41980794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 9343670 - 9343767
Alignment:
| Q |
46 |
cttttgacgatccattccggaggtggccaaaacgaggtggagtactcaggataatcagacaaaggggaaacccggcattgatccaagtgaaaaacaca |
143 |
Q |
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| T |
9343670 |
cttttgacgatccactccggaggtggccagaacaaggtaaaatattcaggacaatcagacagaggtgaaagccgaccttgatccatgtgaaaaacaca |
9343767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 9432711 - 9432776
Alignment:
| Q |
45 |
gcttttgacgatccattccggaggtggccaaaacgaggtggagtactcaggataatcagacaaagg |
110 |
Q |
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| T |
9432711 |
gcttttgacgatccactccggaggtggccagaacaagttgtaatattcaggataatcagacaaagg |
9432776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 9695891 - 9695838
Alignment:
| Q |
86 |
agtactcaggataatcagacaaaggggaaacccggcattgatccaagtgaaaaa |
139 |
Q |
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| T |
9695891 |
agtaatcaggataaccagacaaaggtgaaacccgaccttgatccaagtgaaaaa |
9695838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 9756231 - 9756319
Alignment:
| Q |
54 |
gatccattccggaggtggccaaaacgaggtggagtactcaggataatcagacaaaggggaaacccggcattgatccaagtgaaaaacac |
142 |
Q |
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| T |
9756231 |
gatccactccggaggtggcaagaacaacttgaagtagtcaggataatcagacaaaagtgaaacccgaccttggtccaagcgaaaaacac |
9756319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 16011892 - 16011844
Alignment:
| Q |
94 |
ggataatcagacaaaggggaaacccggcattgatccaagtgaaaaacac |
142 |
Q |
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| T |
16011892 |
ggataatcagacaaaggtgaaatccgaccttgatccaagtgaaaaacac |
16011844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 9617756 - 9617657
Alignment:
| Q |
43 |
cagcttttgacgatccattccggaggtggccaaaacgaggtggagtactcaggataatcagacaaaggggaaacccggcattgatccaagtgaaaaacac |
142 |
Q |
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| T |
9617756 |
cagcttttgaagatccaatccggaggtggccagaacaagttgaagtattcaggataacgagacatagacgaaagccgaccttgatccaaatgaaagacac |
9617657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 5e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 13170953 - 13170770
Alignment:
| Q |
19 |
actctttttatcttttcatgaatgcagcttttgacgatccattccggaggtggccaaaacgaggtggagtactcaggataatcagacaaaggggaaaccc |
118 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| || || ||||||| ||| ||||||| |||||||||| || |
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| T |
13170953 |
actctttttatcttttcacaaatgcagctgttgacgatccattctggaggtggccaaaacaagttgaagtactcgggacaatcagataaaggggaaagcc |
13170854 |
T |
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| Q |
119 |
ggcattgatccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgttgaatgcatcatcactaaagatgacacaat |
202 |
Q |
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| T |
13170853 |
ggcattgatccaagtgaaaaacacacatcccacaaagcatctcgtcaacatagtggaatgcatcatcactaaagatgacacaat |
13170770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 44689065 - 44688943
Alignment:
| Q |
54 |
gatccattccggaggtggccaaaacgaggtggagtactcaggataatcagacaaaggggaaacccggcattgatccaagtgaaaaacacacatcccacaa |
153 |
Q |
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| T |
44689065 |
gatccagtcaggaggtggccagaacaagttggagtgatcaggataatcggacaaaggggaaactctgcgttgatccaagtgaaaaacacacatcccacaa |
44688966 |
T |
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| Q |
154 |
agcatctggtcaaaatcgttgaa |
176 |
Q |
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||||| | |||||||| |||||| |
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| T |
44688965 |
agcatatcgtcaaaatagttgaa |
44688943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 202
Target Start/End: Original strand, 18991041 - 18991188
Alignment:
| Q |
55 |
atccattccggaggtggccaaaacgaggtggagtactcaggataatcagacaaaggggaaacccggcattgatccaagtgaaaaacacacatcccacaaa |
154 |
Q |
| |
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||||| |||||||||||||| ||| || || |||| |||||||||| ||||||||| |||| || || ||||||| |||||||||||||||||| |
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| T |
18991041 |
atccactccggaggtggccagaacaagttgaagtagtcaggataatgagacaaaggagaaagcctttgttcgtccaagtcaaaaacacacatcccacatc |
18991140 |
T |
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| Q |
155 |
gcatctggtcaaaatcgttgaatgcatcatcactaaagatgacacaat |
202 |
Q |
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| T |
18991141 |
gcatgttatcaaaagggatgaacgcatcgtcaataaagacgacacaat |
18991188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 450363 - 450315
Alignment:
| Q |
94 |
ggataatcagacaaaggggaaacccggcattgatccaagtgaaaaacac |
142 |
Q |
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| T |
450363 |
ggataatcagacaagggtgaaacccgaccttgatccaagtgaaaaacac |
450315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 213359 - 213255
Alignment:
| Q |
38 |
gaatgcagcttttgacgatccattccggaggtggccaaaacgaggtggagtactcaggataatcagacaaaggggaaacccggcattgatccaagtgaaa |
137 |
Q |
| |
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|||| ||||||||||||||||| || ||||||||||| ||| || |||| | |||||| ||| ||||| || |||| || | |||||||||||| || |
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| T |
213359 |
gaattcagcttttgacgatccactcgggaggtggccagaacaagttggaaaattcaggagaattagacacagatgaaagtcgaccttgatccaagtgcaa |
213260 |
T |
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| Q |
138 |
aacac |
142 |
Q |
| |
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||||| |
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| T |
213259 |
aacac |
213255 |
T |
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