View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_high_9 (Length: 524)
Name: NF18565_high_9
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 10 - 509
Target Start/End: Original strand, 47745320 - 47745819
Alignment:
| Q |
10 |
atgccaagataagaacaagtaaaacaaggtaacctaactgtaatcaccatgtagtaattaagtatgattaggtaatgacaattagtaattattaccttct |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47745320 |
atgccaagataagaacaagtaaaacaaggtaacctaactgtaatcaccatgtagtaattaagtatgattaggtaatgacaattagtaattattaccttct |
47745419 |
T |
|
| Q |
110 |
tctggtggggaggtttcatcttggtctattactgtcgtaggaccatagaaggaatatatttcatatctaatattacaacttcgtttgagaactctagcac |
209 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
47745420 |
tctggtggggaggtttcatcttggtctattactgtcgtaggaccatagaaggaatatatttcatatctaatattacaacttagtttgagaactctaccac |
47745519 |
T |
|
| Q |
210 |
caatcttcttattnnnnnnncttggaatttctgaaatagcacgctctaaacaatcattgcaatcttgtcctgacaagtcaggtgtacactgcacaagacc |
309 |
Q |
| |
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||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47745520 |
caatcttgttataaaaaaaacttggagtttctgaaatagcacgctctaaacaatcattgcaatcttgtcctgacaagtcaggtgtacactgcacaagacc |
47745619 |
T |
|
| Q |
310 |
atatatggtttcaaaattcaaagttgcattagcggtagcaaacttacgacgagaatcacctgatgcagctatttcattgagtttcctcatcaagttccca |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47745620 |
atatatggtttcaaaattcaaagttgcattagcggtagcaaacttacgacgagaatcacctgatgcagctatttcattgagtttcctcatcaagttccca |
47745719 |
T |
|
| Q |
410 |
agaacttgattaaattgatccacatcggttacatttctattgttccacttataatatgaaaatgaagcatccataatgccaaatattgatcggtttgagt |
509 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47745720 |
agaacttgattaaattgagccacatcggttacatttctattgttccacttataatatgaaaatgaagtatccataatgccaaatattgatcggtttgagt |
47745819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 73 - 509
Target Start/End: Original strand, 47717597 - 47718030
Alignment:
| Q |
73 |
atgattaggtaatgacaattagtaattattaccttcttctggtggggaggtttcatcttggtctattactgtcgtaggaccatagaaggaatatatttca |
172 |
Q |
| |
|
||||||| ||| ||||||||||||||| |||||||||| ||||||||||||| || |||||||||| | |||||| ||||||||||||| |||||| |
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| T |
47717597 |
atgattaattaacgacaattagtaatta---ccttcttctgatggggaggtttcacctgggtctattacaggtgtaggatcatagaaggaatagatttca |
47717693 |
T |
|
| Q |
173 |
tatctaatattacaacttcgtttgagaactctagcaccaatcttcttattnnnnnnncttggaatttctgaaatagcacgctctaaacaatcattgcaat |
272 |
Q |
| |
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| ||||||||| |||||| ||||||||||| || | |||| ||| ||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
47717694 |
tgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctgaaatagcacgctctaaacaatcattgcaat |
47717793 |
T |
|
| Q |
273 |
cttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaaagttgcattagcggtagcaaacttacgacgagaatcacctga |
372 |
Q |
| |
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|||| ||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47717794 |
cttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaacttacgacgagaatcacttga |
47717893 |
T |
|
| Q |
373 |
tgcagctatttcattgagtttcctcatcaagttcccaagaacttgattaaattgatccacatcggttacatttctattgttccacttataatatgaaaat |
472 |
Q |
| |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| | | ||||||| |||||||| | |
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| T |
47717894 |
tgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggttgcatttttcaaggtccactttaaatatgaaggt |
47717993 |
T |
|
| Q |
473 |
gaagcatccataatgccaaatattgatcggtttgagt |
509 |
Q |
| |
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||||| ||||||| ||| ||||||||||||||||||| |
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| T |
47717994 |
gaagcttccataacgccgaatattgatcggtttgagt |
47718030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 21 - 444
Target Start/End: Original strand, 47712742 - 47713171
Alignment:
| Q |
21 |
agaacaagtaaaacaaggtaacctaactgtaatcaccatgtagtaattaagtatgattaggt-aatgacaattagtaattattaccttcttctggtgggg |
119 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||||| ||||| ||| ||||||||||| || ||||||||| |||||||| |||||||||| ||||| |
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|
| T |
47712742 |
agaacaagtaaaacaaaataacctaaatttaatcaccttgtagcaat-aagtatgattaagttaatgacaatcagtaatta---ccttcttctgatgggg |
47712837 |
T |
|
| Q |
120 |
aggtttcatcttggtctattactgtcgtaggaccatagaaggaatatatttcatatctaatattacaacttcgtttgagaactctagcaccaatcttctt |
219 |
Q |
| |
|
|| ||||||||||| ||||||||| |||||| || ||||| ||| | |||||||||||||||||||||| |||||| ||||||| ||||||||| || |
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|
| T |
47712838 |
agtgttcatcttggtttattactgttgtaggatcagagaagcgatagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgtt |
47712937 |
T |
|
| Q |
220 |
attnnnnnnncttggaatttctgaaatagcacgctctaaacaatcattgcaatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtt |
319 |
Q |
| |
|
|| ||||||||||||| |||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
47712938 |
ataacagtaaattggaatttctgatatagcaaactctaaacaatcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtt |
47713037 |
T |
|
| Q |
320 |
tcaaaattcaa---------agttgcattagcggtagcaaacttacgacgagaatcacctgatgcagctatttcattgagtttcctcatcaagttcccaa |
410 |
Q |
| |
|
| ||||||||| |||||||||| | | |||||||||| |||||||||||| ||||||||||||||| | ||||||||||||||||| |||| |
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| T |
47713038 |
tgaaaattcaaattcacatcagttgcattatccgcagcaaacttaagacgagaatcacttgatgcagctatttctctcagtttcctcatcaagtttccaa |
47713137 |
T |
|
| Q |
411 |
gaacttgattaaattgatccacatcggttacatt |
444 |
Q |
| |
|
||||| |||||||| ||||||| ||||||||||| |
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|
| T |
47713138 |
gaactcgattaaatggatccacctcggttacatt |
47713171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 73 - 444
Target Start/End: Original strand, 47759709 - 47760086
Alignment:
| Q |
73 |
atgattaggtaatgacaattagtaattattaccttcttctggtggggaggtttcatcttggtctattactgtcgtaggaccatagaaggaatatatttca |
172 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||| ||||||||||||| || |||||||| | | |||||| |||||||| | | ||||| |
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|
| T |
47759709 |
atgattaattaatgacaattagtaatta---ccttcttctgatggggaggtttcacctgggtctattgcaggtgtaggatcatagaagctagaggtttca |
47759805 |
T |
|
| Q |
173 |
tatctaatattacaacttcgtttgagaactctagcaccaatcttcttattnnnnnnncttggaatttctgaaatagcacgctctaaacaatcattgcaat |
272 |
Q |
| |
|
||||| |||||||||||| |||||||||||||| |||||||||| ||||| |||||||| ||||| ||||||| |||||||||| |||||||| |
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|
| T |
47759806 |
tatctgatattacaacttggtttgagaactctaccaccaatcttgttattacaacaacttggaatatctgagatagcaccatctaaacaattattgcaat |
47759905 |
T |
|
| Q |
273 |
cttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaa---------agttgcattagcggtagcaaacttacgacgaga |
363 |
Q |
| |
|
|||| ||||||| |||||||| ||||| ||||||||||||||||||| ||||||||| |||||||||| | |||||||| ||||||||||| |
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|
| T |
47759906 |
cttgctctgacaaatcaggtgtgcactgaacaagaccatatatggtttgaaaattcaaatttacatcagttgcattatctgtagcaaatttacgacgaga |
47760005 |
T |
|
| Q |
364 |
atcacctgatgcagctatttcattgagtttcctcatcaagttcccaagaacttgattaaattgatccacatcggttacatt |
444 |
Q |
| |
|
||||| |||||||||| | || || ||||||||||||||||||||||||||||| |||||||||||||| || |||||||| |
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|
| T |
47760006 |
atcacttgatgcagctttctctttcagtttcctcatcaagttcccaagaacttggttaaattgatccacctctgttacatt |
47760086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 47704828 - 47704942
Alignment:
| Q |
108 |
cttctggtggggaggtttcatcttggtctattactgtcgtaggaccatagaaggaatatatttcatatctaatattacaacttcgtttgagaactctagc |
207 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||| |||||| |||||| |||||| | |
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|
| T |
47704828 |
cttctgatggggaggtttcatctgggtctattactgtcgtaggaccatagaagggattggtttcatatctaatattgcaacttggtttgataactcttcc |
47704927 |
T |
|
| Q |
208 |
accaatcttcttatt |
222 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
47704928 |
accaatcttgttatt |
47704942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 47782277 - 47782236
Alignment:
| Q |
281 |
gacaagtcaggtgtacactgcacaagaccatatatggtttca |
322 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
47782277 |
gacaagtcaggtgtacactgaacaagaccatatattgtttca |
47782236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 28830930 - 28830976
Alignment:
| Q |
168 |
tttcatatctaatattacaacttcgtttgagaactctagcaccaatc |
214 |
Q |
| |
|
||||||||||||||||||||||| |||| | |||||||||||||||| |
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|
| T |
28830930 |
tttcatatctaatattacaacttggtttcataactctagcaccaatc |
28830976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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