View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_low_12 (Length: 481)
Name: NF18565_low_12
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 46 - 465
Target Start/End: Complemental strand, 41863729 - 41863311
Alignment:
| Q |
46 |
taccattgatagccatgtcacagaagttaacaaagaagttcttagaaagnnnnnnntgtcacggcacaaaacaaagacttctagagcttaactgnnnnnn |
145 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41863729 |
taccattgatagccatgtcacagtagttaacaaagaagttcttagaaagaaaaaactgtcacggcacaaaacaaagacttctagagcttaactgaaaaaa |
41863630 |
T |
|
| Q |
146 |
ngcttgaaagttgcatagagtggcaacaaagaaaatagataattgtacaatagttttcttcatcaacatgaaaaacgacagagcctaagctaggattcat |
245 |
Q |
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||||||||||||| |||||| ||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41863629 |
-gcttgaaagttgcgtagagtagcaactaagaaaatcgacaattgtacaatagttttcttgatcaacatgaaaaacgacagagcctaagctaggattcat |
41863531 |
T |
|
| Q |
246 |
cggttacacacaatattcacgatgatgcaatttatggcgtgcatacacctgaattcctaaacacaattgttgtttcaggatttccaaatcacaaattaag |
345 |
Q |
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||||||||| |||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
41863530 |
cggttacacgcaattttcacgatgatgcaatttatggcatgcatacacccgaattcctaaacacaattgttgcttcaggacttccaaatcacaaattaag |
41863431 |
T |
|
| Q |
346 |
actaaaagttggagtgccggtcatgttgttgaggaatttagatctttaaaatggtttatgcaatggaacaaggttgatcgtaactagaatgggaaaatac |
445 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
41863430 |
actaaaagttggagtaccggtcatgctgttgaggaatttagatcttcaaaatggtttatgcaatggaacaaggttgatcataaccagaatgggaaaatat |
41863331 |
T |
|
| Q |
446 |
gtgctagagggtaaggaaat |
465 |
Q |
| |
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|||||||||||||||||||| |
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| T |
41863330 |
gtgctagagggtaaggaaat |
41863311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 249 - 455
Target Start/End: Complemental strand, 49200716 - 49200509
Alignment:
| Q |
249 |
ttacacacaatattcacgatgatgcaatttatggcgtgcatacacctgaattcctaaacacaattgttgtttcaggatttccaaa--tcacaaattaaga |
346 |
Q |
| |
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|||||| ||||||||| | |||| |||| ||| |||||||||| ||| ||| |||||||||||||||| |||| || ||||||| ||||||||||||| |
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| T |
49200716 |
ttacacgcaatattcatggtgatataattgatgacgtgcatacatctgcatttctaaacacaattgttgcttcaagagttccaaaaatcacaaattaaga |
49200617 |
T |
|
| Q |
347 |
ctaaaagttggagtgccggtcatgttgttgaggaatttagatctttaaaatggtttatgcaatggaacaaggttgatcgtaactagaatgggaaaatacg |
446 |
Q |
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||||| ||||||||| |||||||||||||||| ||||||||| | |||| | ||||| ||||||||||||||| ||| ||||||||||||||||||| | |
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| T |
49200616 |
ctaaaggttggagtgtcggtcatgttgttgagaaatttagatatacaaaa-gatttattcaatggaacaaggttaatcataactagaatgggaaaatatg |
49200518 |
T |
|
| Q |
447 |
tgctagagg |
455 |
Q |
| |
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|||| |||| |
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|
| T |
49200517 |
tgcttgagg |
49200509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 443
Target Start/End: Complemental strand, 26626637 - 26626595
Alignment:
| Q |
401 |
ttatgcaatggaacaaggttgatcgtaactagaatgggaaaat |
443 |
Q |
| |
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|||||||||||||||||||| ||| |||| ||||||||||||| |
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| T |
26626637 |
ttatgcaatggaacaaggttaatcataaccagaatgggaaaat |
26626595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 415 - 461
Target Start/End: Complemental strand, 24323222 - 24323176
Alignment:
| Q |
415 |
aaggttgatcgtaactagaatgggaaaatacgtgctagagggtaagg |
461 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
24323222 |
aaggttgatcataactagaatgagaaaatacgtgctagagggtaagg |
24323176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 456
Target Start/End: Original strand, 16969600 - 16969769
Alignment:
| Q |
287 |
catacacctgaattcctaaacacaattgttgtttcaggatttccaaatcacaaattaagactaaaagttggagtgccggtcatgttgttgaggaatttag |
386 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |||||| |||| |||||||| |||| |||| ||||| ||||| || ||| | || |||||||||| |
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| T |
16969600 |
catacaccagaattcctaaatacaattgttgcttcaggccttcccaatcacaagttaaagttaaaggttggcgtgccagttatgctattaaggaatttag |
16969699 |
T |
|
| Q |
387 |
atctttaaaatggtttatgcaatggaacaaggttgatcgtaactagaatgggaaaatacgtgctagaggg |
456 |
Q |
| |
|
||| || |||| |||| |||||||| || ||||| |||| || ||||| |||| ||||||||||| |
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| T |
16969700 |
atcaacaatatgggctatgtaatggaaccagattgattataaccaggatgggtaaatttgtgctagaggg |
16969769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 466
Target Start/End: Complemental strand, 18415893 - 18415714
Alignment:
| Q |
287 |
catacacctgaattcctaaacacaattgttgtttcaggatttccaaatcacaaattaagactaaaagttggagtgccggtcatgttgttgaggaatttag |
386 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| || ||| |||| || ||||| ||||| | || | |||||||| || ||||||||||||||||||| |
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| T |
18415893 |
catacacccaaattccttaacacaattgttgcctcgggacttcctaaccacaagttaaggttgaaggaaggagtgcctgttatgttgttgaggaatttag |
18415794 |
T |
|
| Q |
387 |
atctttaaaatggtttatgcaatggaacaaggttgatcgtaactagaatgggaaaatacgtgctagagggtaaggaaatt |
466 |
Q |
| |
|
| | |||||||||||||||||||| || | || ||||||||||||||| ||| || ||||||| |||| |||| |
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| T |
18415793 |
acacaaagaatggtttatgcaatggaaccagacttattataactagaatgggaagatatgtcttagagggcaaggtaatt |
18415714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 466
Target Start/End: Original strand, 21799527 - 21799706
Alignment:
| Q |
287 |
catacacctgaattcctaaacacaattgttgtttcaggatttccaaatcacaaattaagactaaaagttggagtgccggtcatgttgttgaggaatttag |
386 |
Q |
| |
|
|||||||| ||||| || ||||||||||||| || ||| |||| || ||||| ||||| | || | |||||||| || ||||||||||||||||||| |
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| T |
21799527 |
catacacccgaatttcttaacacaattgttgcctcgggacttcctaaccacaagttaaggttgaaggaaggagtgcctgttatgttgttgaggaatttag |
21799626 |
T |
|
| Q |
387 |
atctttaaaatggtttatgcaatggaacaaggttgatcgtaactagaatgggaaaatacgtgctagagggtaaggaaatt |
466 |
Q |
| |
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| | |||||||||||||||||||| || | || ||||||||||||||| ||| || ||||||| |||| |||| |
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|
| T |
21799627 |
acacaaagaatggtttatgcaatggaaccagacttattataactagaatgggaagatatgtcttagagggcaaggtaatt |
21799706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 440
Target Start/End: Complemental strand, 21001253 - 21001100
Alignment:
| Q |
287 |
catacacctgaattcctaaacacaattgttgtttcaggatttccaaatcacaaattaagactaaaagttggagtgccggtcatgttgttgaggaatttag |
386 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| || ||| |||| || ||||| ||||| | || | |||||||| || ||||||||||||||||||| |
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| T |
21001253 |
catacacccgaattccttaacacaattgttgcctcgggacttcctaaccacaagttaaggttgaaggaaggagtgccagttatgttgttgaggaatttag |
21001154 |
T |
|
| Q |
387 |
atctttaaaatggtttatgcaatggaacaaggttgatcgtaactagaatgggaa |
440 |
Q |
| |
|
| | |||||||||||||||| ||| || | || ||||||||||||||| |
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| T |
21001153 |
acacaaagaatggtttatgcaatgaaaccagacttattataactagaatgggaa |
21001100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 443
Target Start/End: Complemental strand, 34417328 - 34417286
Alignment:
| Q |
401 |
ttatgcaatggaacaaggttgatcgtaactagaatgggaaaat |
443 |
Q |
| |
|
|||||||| ||||||||||| ||| |||||||||||||||||| |
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|
| T |
34417328 |
ttatgcaacggaacaaggttaatcataactagaatgggaaaat |
34417286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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