View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18565_low_13 (Length: 478)

Name: NF18565_low_13
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18565_low_13
NF18565_low_13
[»] chr2 (1 HSPs)
chr2 (1-466)||(12916810-12917275)
[»] chr4 (2 HSPs)
chr4 (315-417)||(42359313-42359415)
chr4 (415-447)||(32698086-32698118)
[»] chr1 (4 HSPs)
chr1 (325-417)||(11710553-11710645)
chr1 (325-398)||(24611103-24611176)
chr1 (325-377)||(48594055-48594107)
chr1 (325-377)||(48598666-48598718)
[»] chr7 (4 HSPs)
chr7 (325-432)||(31848094-31848203)
chr7 (414-447)||(5610249-5610282)
chr7 (325-417)||(32197875-32197968)
chr7 (325-373)||(41693645-41693693)
[»] chr6 (1 HSPs)
chr6 (325-432)||(21953206-21953316)


Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 12916810 - 12917275
Alignment:
Q  1 cactgctaagaaaaattaggactcaatgaagaagaaatatgaagagagttctagagtgaagcgttcacttattcaaaactctagaaatgaagaaaggtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12916810 cactgctaagaaaaattaggactcaatgaagaagaaatatgaagagagttctagagtgaagcgttcacttattcaaaactctagaaatgaagaaaggtga 12916909  T
Q  101 gaacaacatgaaagatatcaccattgtagataatatccttagaactctaatagaaatatttgctgatgtagttgtgtcgattgaagaatctaaggaaatt 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12916910 gaacaacatgaaagatatcaccattatagataatatccttagaactctaatagaaatatttgctgatgtagttgtgtcgattgaagaatctaaggaaatt 12917009  T
Q  201 gatacaatcacagttgatgaactttgaagttcactcattgtgcacgaacaaaattttgctaccaaatttaaacattttagaagtttatgttagatttatg 300  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12917010 gatgcaatcacagttgatgaactttgaagttcactcattgtgcacgaacaaaattttgctaccaaatttaaacattttagaagtttatgtttgatttatg 12917109  T
Q  301 ataggtgtcaagcaatttatttttggctaaaatatgttgttgatccctgtaaatacgacgaatatgggttttgatccatgtaaaaataaacttttgaaaa 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  12917110 ataggtgtcaagcaatttatttttggctaaaatatgttgttgatccctgtaaatacaacgaatatgggttttgatctatgtaaaaataaacttttgaaaa 12917209  T
Q  401 acgtcccggcaaaatttattttttaaaatagttattgggtccactttctgaatgatttggcatatt 466  Q
    | ||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12917210 atgtctcggcaaaatttgttttttaaaatagttattgggtccactttttgaatgatttggcatatt 12917275  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 315 - 417
Target Start/End: Complemental strand, 42359415 - 42359313
Alignment:
Q  315 atttatttttggctaaaatatgttgttgatccctgtaaatacgacgaatatgggttttgatccatgtaaaaataaacttttgaaaaacgtcccggcaaaa 414  Q
    |||| ||||||||||||||||||| ||| |||||| |||||   ||| | ||| ||||| ||| ||  |||| |||||||||||||||||||| ||||||    
T  42359415 atttttttttggctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtccctggtaaaaaaaacttttgaaaaacgtccctgcaaaa 42359316  T
Q  415 ttt 417  Q
    |||    
T  42359315 ttt 42359313  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 447
Target Start/End: Original strand, 32698086 - 32698118
Alignment:
Q  415 tttattttttaaaatagttattgggtccacttt 447  Q
    |||||||||||||||||| ||||||||||||||    
T  32698086 tttattttttaaaatagtcattgggtccacttt 32698118  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 417
Target Start/End: Original strand, 11710553 - 11710645
Alignment:
Q  325 ggctaaaatatgttgttgatccctgtaaatacgacgaatatgggttttgatccatgtaaaaataaacttttgaaaaacgtcccggcaaaattt 417  Q
    |||||||||||||| ||||||||||||||||  ||||   ||||||||| ||| ||  |||| |||||||||||| ||| ||| |||||||||    
T  11710553 ggctaaaatatgtttttgatccctgtaaatataacgaggttgggttttggtccctggtaaaaaaaacttttgaaatacgcccctgcaaaattt 11710645  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 398
Target Start/End: Complemental strand, 24611176 - 24611103
Alignment:
Q  325 ggctaaaatatgttgttgatccctgtaaatacgacgaatatgggttttgatccatgtaaaaataaacttttgaa 398  Q
    |||||||||||||| ||| |||||||||||| ||||| | || |||||| ||| ||  |||||||| |||||||    
T  24611176 ggctaaaatatgtttttggtccctgtaaatatgacgagtttgagttttggtccctggtaaaataaaattttgaa 24611103  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 48594107 - 48594055
Alignment:
Q  325 ggctaaaatatgttgttgatccctgtaaatacgacgaatatgggttttgatcc 377  Q
    |||||||||||||| ||| |||||||||||| | ||| | |||||||||||||    
T  48594107 ggctaaaatatgtttttggtccctgtaaatatggcgagtttgggttttgatcc 48594055  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 48598718 - 48598666
Alignment:
Q  325 ggctaaaatatgttgttgatccctgtaaatacgacgaatatgggttttgatcc 377  Q
    |||||||||||||| ||| |||||||||||| | ||| | |||||||||||||    
T  48598718 ggctaaaatatgtttttggtccctgtaaatatggcgagtttgggttttgatcc 48598666  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 432
Target Start/End: Complemental strand, 31848203 - 31848094
Alignment:
Q  325 ggctaaaatatgttgttgatccctgtaaatacgacgaatatgggttttgatccatgtaaaaataaacttttgaaaaacgtcccggcaaaa---tttattt 421  Q
    |||||||||||||| ||  |||||| |||||   ||||| ||||||||| ||| ||  |||| ||||||||||||||||| || ||||||   |||||||    
T  31848203 ggctaaaatatgtttttagtccctgcaaatatagcgaatttgggttttggtccctggtaaaaaaaacttttgaaaaacgt-cctgcaaaattttttattt 31848105  T
Q  422 tttaaaatagt 432  Q
    |||||||||||    
T  31848104 tttaaaatagt 31848094  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 447
Target Start/End: Original strand, 5610249 - 5610282
Alignment:
Q  414 atttattttttaaaatagttattgggtccacttt 447  Q
    |||||||||||||||||||| |||||||||||||    
T  5610249 atttattttttaaaatagttcttgggtccacttt 5610282  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 417
Target Start/End: Complemental strand, 32197968 - 32197875
Alignment:
Q  325 ggctaaaatatgttgttgatccctgtaaatacgacgaatatgggttttgatccat-gtaaaaataaacttttgaaaaacgtcccggcaaaattt 417  Q
    |||||||||||| | ||| |||||| |||||   ||||| ||||||||| ||| | ||||||| ||| ||||||||| |||||| |||||||||    
T  32197968 ggctaaaatatgcttttggtccctgcaaatatagcgaatttgggttttggtccttggtaaaaaaaaaattttgaaaagcgtccctgcaaaattt 32197875  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 373
Target Start/End: Original strand, 41693645 - 41693693
Alignment:
Q  325 ggctaaaatatgttgttgatccctgtaaatacgacgaatatgggttttg 373  Q
    |||||||||||||| |||||||||| ||||| | ||||| |||||||||    
T  41693645 ggctaaaatatgtttttgatccctgcaaatatggcgaatttgggttttg 41693693  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 432
Target Start/End: Original strand, 21953206 - 21953316
Alignment:
Q  325 ggctaaaatatgttgttgatccctgtaaatacgacgaatatgggttttgatccatgtaaaaataaacttttgaaaaacgtcccggcaaaa---tttattt 421  Q
    |||||||||||| | ||| |||||| |||||   ||||| ||| ||||| ||| ||  |||| |||  ||||||||||||||| ||||||   |||||||    
T  21953206 ggctaaaatatgcttttggtccctgcaaatatagcgaatttggattttggtccctggtaaaaaaaaaatttgaaaaacgtccctgcaaaattttttattt 21953305  T
Q  422 tttaaaatagt 432  Q
    |||||||||||    
T  21953306 tttaaaatagt 21953316  T

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