View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_low_16 (Length: 452)
Name: NF18565_low_16
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 22 - 408
Target Start/End: Original strand, 12916465 - 12916849
Alignment:
| Q |
22 |
ctttattattagtcccgtttggaagagtctattgaagttaaattgattcaatgtggatcacatatgtaagattattagtcccctttgaaagagtctattg |
121 |
Q |
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| T |
12916465 |
ctttattattagtcccgtttggaagagtctattgaagttaaattaattcaatgtggatcacatatgtaagattattagtcccctttgaaagagtctattg |
12916564 |
T |
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| Q |
122 |
aagttaaattaagccaaatagctaatttgatgacaaagacattgaagttaagaagcatttattaaaactcagaaatatgatgggaatgtgtaaggataca |
221 |
Q |
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| T |
12916565 |
aagttaaattaagccaaatagctaatttgatgacaaagacattgaagttaagaagcatttattaaaactcagaaatatgatgggaatgtgtaaggataca |
12916664 |
T |
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| Q |
222 |
tatgcaaactagatgcattttcacagttaagtttaaaggagtgaaagagtttatcgactaaaactaggatatcaaagtgaagaacttcctttgtcaatta |
321 |
Q |
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| T |
12916665 |
tatgcaaactagatgcattttcacagttaagtttaaaggagtggaagagtttatcgactaaaactaggacatcaaagtgaagaactacctttgtcaatca |
12916764 |
T |
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| Q |
322 |
gtttctaggaccatttgcgaaactgtatattgtaattttaattaggacactcctaagaaaatttagcgctctatgaagaataaatat |
408 |
Q |
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| T |
12916765 |
attgataggaccattttcgaaac--catattgtaaaatgtaaaaggacactgctaagaaaaattaggactcaatgaagaagaaatat |
12916849 |
T |
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