View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_low_19 (Length: 413)
Name: NF18565_low_19
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_low_19 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 20 - 413
Target Start/End: Original strand, 37957407 - 37957800
Alignment:
| Q |
20 |
ttttctgccctgaagaaatttgcccaaaactttaagcgctaccggaaccccgttagcataatctaataccttttttgataaactcacataaggttctatt |
119 |
Q |
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| T |
37957407 |
ttttctgccctgaagaaatttgcccaaaactttaagcgctaccggaaccccgttagcataatctaataccttttttgataaactcacataaggttctatt |
37957506 |
T |
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| Q |
120 |
ggatggttttgtttaaaagcaaatgaacagaagagttttagagaatcttgagaacccatctcatttactttatatatttcatcagcattgccattcttga |
219 |
Q |
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| T |
37957507 |
ggatggttttgtttaaaagcaaatgaacagaagagttttagagaatcttgagaacccatctcatttactttatatatttcatcagcattgccattcttga |
37957606 |
T |
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| Q |
220 |
gcacttgcttgtctctgttagtcacaatgattatactcccttggccaaagttactatgatgtgttccaattaaatcttcaagttgatcagaatctttcac |
319 |
Q |
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| T |
37957607 |
gcacttgcttgtctctgttagtcacaatggttctactcccttggccaaagttactatgatgtgttccaattaaatcttcaagttgatcagaatctttcac |
37957706 |
T |
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| Q |
320 |
atcatcaagaacaaggagaatctttgtccgtttgagccttggatcaaatgaaaaattggatttagaggatgtaatgtcttcatctagaagttct |
413 |
Q |
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| T |
37957707 |
atcatcaagaacaaggagaatctttgtccgtttgagccttggatcaaatgaaaaattggatttagaggatgtaatgtcttcatctagaagttct |
37957800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 42 - 411
Target Start/End: Complemental strand, 37930154 - 37929789
Alignment:
| Q |
42 |
cccaaaactttaagcgctaccggaaccccgttagcataatctaataccttttttgataaactcacataaggttctattggatggttttgtttaaaagcaa |
141 |
Q |
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| T |
37930154 |
cccaaaactttgagagctaatggaactcctttagcataatttaataccttttctgataagctcacataagtttatattggatagttttgtttaaaagcac |
37930055 |
T |
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| Q |
142 |
atgaacagaagagttttagagaatcttgagaacccatctcatttactttatatatttcatcagcattgccattcttgagcacttgcttgtctctgttagt |
241 |
Q |
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| T |
37930054 |
ttaaacagaagagttgtagagaatcttgaaaatccatctccctaacttcatatatttcatcggcattggcattctcaagcacttgcttgtctctactact |
37929955 |
T |
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| Q |
242 |
cacaatgattatactcccttggcc--aaagttactatgatgtgttccaattaaatcttcaagttgatcagaatctttcacatcatcaagaacaaggagaa |
339 |
Q |
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| T |
37929954 |
cacaatgattctactcccaaggccaaaaaggtactacga------ccaattaaaccttcaagttgatctgaatcgttcacgtcatcaagaacaaggagaa |
37929861 |
T |
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| Q |
340 |
tctttgtccgtttgagccttggatcaaatgaaaaattggatttagaggatgtaatgtcttcatctagaagtt |
411 |
Q |
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| T |
37929860 |
cctttcctcgttgaagccttggaatgtatgaaaacttgaatccagaggatgtaatgtcttcctctagaagtt |
37929789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 127 - 372
Target Start/End: Original strand, 44644330 - 44644572
Alignment:
| Q |
127 |
tttgtttaaaagcaaatgaacagaagagttttagagaatcttgagaacccatctcatttactttatatatttcatcagcattgccattcttgagcacttg |
226 |
Q |
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| T |
44644330 |
tttgtttaaaggcatttaaacagaagagtcgtagagattcatgaaaattcatctccttgacttcatatattccatcagctttgacattcttcagtacctg |
44644429 |
T |
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| Q |
227 |
cttgtctctgttagtcacaatgattatactcccttggccaaagttactatgatgtgttccaattaaatcttcaagttgatcagaatctttcacatcatca |
326 |
Q |
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| T |
44644430 |
catgtctctgctagtcacaatgattctactacctggtgcaaacttactaagct---ttccaattaaatctctaagttgatccgaattgttaacatcatca |
44644526 |
T |
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| Q |
327 |
agaacaaggagaatctttgtccgtttgagccttggatcaaatgaaa |
372 |
Q |
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| T |
44644527 |
agaacaaggagagccttagtccatttgagcctttgatcaaatgaaa |
44644572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 272
Target Start/End: Complemental strand, 25721671 - 25721504
Alignment:
| Q |
105 |
acataaggttctattggatggttttgtttaaaagcaaatgaacagaagagttttagagaatcttgagaacccatctcatttactttatatatttcatcag |
204 |
Q |
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| T |
25721671 |
acataagcttttataggatagttttgtttaaaggcatttaaactgaagagttgtactgaatcttgaaaacacatctccttgacttcgtatatttcatctg |
25721572 |
T |
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| Q |
205 |
cattgccattcttgagcacttgcttgtctctgttagtcacaatgattatactcccttggccaaagtta |
272 |
Q |
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| T |
25721571 |
aaatggcattcttaagcacatgtttgtctctactagtcataatgattctactaccctggccaaagtta |
25721504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 19869328 - 19869225
Alignment:
| Q |
153 |
agttttagagaatcttgagaacccatctcatttactttatatatttcatcagcattgccattcttgagcacttgcttgtctctgttagtcacaatgatta |
252 |
Q |
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| T |
19869328 |
agttgtagagaatcttgaaaattcatctcattcacttcatatatttcatcagcatctatattcttaagtacttgcatgtctctactagtcacaatgattc |
19869229 |
T |
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| Q |
253 |
tact |
256 |
Q |
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|||| |
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| T |
19869228 |
tact |
19869225 |
T |
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