View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_low_2 (Length: 725)
Name: NF18565_low_2
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 636; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 23 - 707
Target Start/End: Original strand, 9776368 - 9777052
Alignment:
| Q |
23 |
gaatcattgctactatcctccggcgaagcaacagccttaaccatcatacgagctgctttagccgccgcagcttgaatatccctagcagtacacaaagacg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9776368 |
gaatcattgctactatcctccggcgaagcaacagccttaaccatcatacgagctgctttagccgccgcagcttgaatatccctagcagtacacaaagacg |
9776467 |
T |
|
| Q |
123 |
gcggaggaagcaccggcagacggtgcacttcatcaggaaaattcagctgtgctttacaacctttcaaacaatatgcagcaacatcataagcctttgcagc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9776468 |
gcggaggaagcaccggcagacggtgcacttcatcaggaaaattcagctgtgctttacaacctttcaaacaatatgcagcaacatcataagcctttgcagc |
9776567 |
T |
|
| Q |
223 |
catctccggcgccggaaaagaccctagccatattcttgacttttttcttggctctctaatctctgacacccattttccccaccgccttttcctgacgccg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9776568 |
catctccggcgccggaaaagaccctagccatattcttgacttttttcttggctctctaatctctgacacccattttccccaccgccttttcctgacgccg |
9776667 |
T |
|
| Q |
323 |
tggaaaaccggatgtctggttccgccacggccagattgggcggtgggattctttgttgttagggtttttactgccacgtcaggtttggttgtgaagttca |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9776668 |
tggaaaaccggatgtctggttccgccacggccagattgggcggcgggattctttgttgttagggtttttactgccacgtcaggtttggttgtgaagttca |
9776767 |
T |
|
| Q |
423 |
aatgttgttgatgctccattcaggannnnnnngtgtgtgtctgtgttttgagtttcaggtttattataagaagtttgtaattgtgtgtggtgtggaatta |
522 |
Q |
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| T |
9776768 |
aatgttgttgctgctccattcagattttttttgtgtgtgtctgtgttttgagtttgtggtttattataagaagtttgtaattgtgtgtggtgtggaatta |
9776867 |
T |
|
| Q |
523 |
cataagtgtccttgtattataaagagtgaaaaggaagagcaaaagttactcattctatttttctacgtaagaaaggaccagcatgcaattaaaagatggc |
622 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9776868 |
cataagtgtccttgtattataaagagtgaaaaggaagagcaaaagttactcattctatttttctacgtaagaaaggaccagcatgcaattaaaagatggc |
9776967 |
T |
|
| Q |
623 |
aatggcgtgttttcattgctttacaattacactgctcaacatagtacaattgatgctatatttggttatagtttgagcatagctt |
707 |
Q |
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| T |
9776968 |
aatggcgtgttttcattgctttccaattacactgctcaacatagtacaattgatgctatatttggttatagtttgagcatagctt |
9777052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 41521749 - 41521694
Alignment:
| Q |
248 |
agccatattcttgacttttttcttggctctctaatctctgacacccattttcccca |
303 |
Q |
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||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| |
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| T |
41521749 |
agccaaattcttgatttttttcttggctctctaatctctgatacccatttgcccca |
41521694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 16357871 - 16357926
Alignment:
| Q |
248 |
agccatattcttgacttttttcttggctctctaatctctgacacccattttcccca |
303 |
Q |
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||||||||||||||||| ||||||||||| | ||| || || |||||||||||||| |
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| T |
16357871 |
agccatattcttgacttctttcttggctcacgaatttcagatacccattttcccca |
16357926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 3996430 - 3996488
Alignment:
| Q |
245 |
cctagccatattcttgacttttttcttgg-ctctctaatctctgacacccattttcccca |
303 |
Q |
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|||||||| |||||||| ||||||||||| ||||||||| ||||| |||||||||||||| |
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| T |
3996430 |
cctagccaaattcttga-ttttttcttgggctctctaatttctgaaacccattttcccca |
3996488 |
T |
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