View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_low_23 (Length: 392)
Name: NF18565_low_23
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 41403302 - 41403649
Alignment:
| Q |
1 |
acagatgcagaatccctaaaggtatgtttaaagattcatgattatattttatggtcacaccaacaaataaataaaagaattatttagaattattgtattg |
100 |
Q |
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| T |
41403302 |
acagatgcagaatccctaaaggtatgtttaaagattcatgattatattttatggtcacaccaacaaataaataaaagaa----------ttattgtattg |
41403391 |
T |
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| Q |
101 |
tatataataattgtggttgaatcaaatataaaatataaatatcaggtaagtcaacatagagaaatatcaaatgctaaaggtcaggctagtagtgggaatg |
200 |
Q |
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| T |
41403392 |
tatataataattgtggttgaatctaatataaaatataaatatcaggtaagtcaacatagagaaatatcaaatgctaaaggtcaggctagtagtgggaatg |
41403491 |
T |
|
| Q |
201 |
gacttcatcagaagaaagatgtcaagacaacaacggatcaaggttcccttaacagagacatttcaattaaattcaaaaacaatgatgatgttttggaggt |
300 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41403492 |
cacttcatcagaagaaagatgtcaatacaacaacagatcaaggttcccttaacagagacatttcaattaaattcaaaaacaatgatgatgttttggaggt |
41403591 |
T |
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| Q |
301 |
aattaatgtggagaaaaatgcattactcaaatttctaagagatatagacattggtggt |
358 |
Q |
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| T |
41403592 |
aattaatgtggagaagaatgcattactcaaatttctaagagatatagacattggtggt |
41403649 |
T |
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