View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18565_low_24 (Length: 388)
Name: NF18565_low_24
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 12 - 376
Target Start/End: Original strand, 12039365 - 12039732
Alignment:
| Q |
12 |
agagaactcaccgatctcaacaaactgagaggtcacatggaaatttcgcatctggaacaagtcaagttcttgcaatccaaggaaattgctaaagatgaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12039365 |
agagaactcaccgatctcaacaaactgagaggtcacatggaaatttcgcatctggaacaagtcaagttctcgcaatccaaggaaattgctaaagatgaat |
12039464 |
T |
|
| Q |
112 |
ttttgnnnnnnnnnnnntaccttgggttcttgactctaagatgggatcatgagg---aggaggagaaagaaagcaatgtcaacgacgagaagtcgcttga |
208 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12039465 |
ttttgaaaaacaaaaaataccttgggttcttgactctaagatgggatcatgaggaggaggaggagaaggaaagcaatgtcaacgacgagaagtcgcttga |
12039564 |
T |
|
| Q |
209 |
ctgtcttgtgccaccttcgaatctgagagtgttattcattgtggggtacaatggtcacaccttgtctgactggctcggtttacttcattgtcttgttaag |
308 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
12039565 |
ctgtattgtgccaccttcgaatctgagagtgttattcattgtggggtacaatggtcacaccttgtctgactggttcggttcacttcattgtcttgttaag |
12039664 |
T |
|
| Q |
309 |
tttaccttgaatgactgcccaaaatgcgaatttctcccgccaatggatgagcttccacatctcaaggt |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12039665 |
tttaccttgaatgactgcccaaaatgcgaatttctcccgccaatggatgagcttccacatctcaaggt |
12039732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 376
Target Start/End: Original strand, 11828470 - 11828832
Alignment:
| Q |
17 |
actcaccgatctcaacaaactgagaggtcacatggaaatttcgcatctggaacaagtcaagttcttgcaatccaaggaaattgctaaagatgaatttttg |
116 |
Q |
| |
|
|||||| ||||| ||||| ||||| || ||| |||||||| ||||||||||||| ||||||||| | ||| || ||| |||||||||||| |||||| |
|
|
| T |
11828470 |
actcacagatcttaacaatctgaggggccacttggaaattatgcatctggaacaaatcaagttctctccatcaaaagaagctgctaaagatgattttttg |
11828569 |
T |
|
| Q |
117 |
nnnnnnnnnnnntaccttgggttcttgactctaagatgggatcatgaggaggaggagaaagaaagcaatgtc---aacgacgagaagtcgcttgactgtc |
213 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || |||||||| |||||||||||||| || ||| |||| |||||||| |||| |
|
|
| T |
11828570 |
aaaaataaacaacaccttgagttcttgactctaagatgggatcacgatgaggaggacgaagaaagcaatgtcgagaaagacaagaaatcgcttgattgtc |
11828669 |
T |
|
| Q |
214 |
ttgtgccaccttcgaatctgagagtgttattcattgtggggtacaatggtcacaccttgtctgactggctcggtttacttcattgtcttgttaagtttac |
313 |
Q |
| |
|
| ||||| | | |||||| |||| |||| |||| |||||||| |||||||| |||||| ||||||||| || |||||| || |||||||||||||| |
|
|
| T |
11828670 |
tccagccacatccaaatctgcaagtgctattagttgtcgggtacaacggtcacacattgtctaactggctcgcttcacttcaatgccttgttaagtttac |
11828769 |
T |
|
| Q |
314 |
cttgaatgactgcccaaaatgcgaatttctcccgccaatggatgagcttccacatctcaaggt |
376 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11828770 |
cttgaatgactgtcccaaatgcgaatttctcccaccaatggatgagcttccacatctcaaggt |
11828832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 198 - 376
Target Start/End: Complemental strand, 11901747 - 11901569
Alignment:
| Q |
198 |
aagtcgcttgactgtcttgtgccaccttcgaatctgagagtgttattcattgtggggtacaatggtcacaccttgtctgactggctcggtttacttcatt |
297 |
Q |
| |
|
|||| |||||| ||||||| ||||| | ||||| |||||| | |||||||||||||||||||| |||||||||||||| |||||||| || | || | |
|
|
| T |
11901747 |
aagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatcgtcacaccttgtctaactggctccattccatccagt |
11901648 |
T |
|
| Q |
298 |
gtcttgttaagtttaccttgaatgactgcccaaaatgcgaatttctcccgccaatggatgagcttccacatctcaaggt |
376 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||||||| |||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
11901647 |
gtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggt |
11901569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 376
Target Start/End: Original strand, 11860605 - 11860964
Alignment:
| Q |
17 |
actcaccgatctcaacaaactgagaggtcacatggaaatttcgcatctggaacaagtcaagttcttgcaatccaaggaaattgctaaagatgaatttttg |
116 |
Q |
| |
|
|||||| ||||| ||||| |||||||| ||| |||||||||| ||||| |||||||||||||||| | ||| |||||| |||||||||||| |||||| |
|
|
| T |
11860605 |
actcacagatcttaacaatctgagaggccacttggaaatttctcatcttgaacaagtcaagttctctccatcaaaggaagctgctaaagatgattttttg |
11860704 |
T |
|
| Q |
117 |
nnnnnnnnnnnntaccttgggttcttgactctaagatgggatcatgaggaggaggagaaagaaagcaatgtcaac---gacgagaagtcgcttgactgtc |
213 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||| |||||||| ||||||||||||| || || | || | | || |||| |
|
|
| T |
11860705 |
aaaaataagcaacacctcgagttcttgactctaagatgggatcatgacgaggagga---agaaagcaatgtcgacattgataataaatttatcgattgtc |
11860801 |
T |
|
| Q |
214 |
ttgtgccaccttcgaatctgagagtgttattcattgtggggtacaatggtcacaccttgtctgactggctcggtttacttcattgtcttgttaagtttac |
313 |
Q |
| |
|
| | ||||| | |||||||| || | |||| |||| |||||| |||| |||| |||||| | ||||||| || |||||| | |||| ||| ||||| |
|
|
| T |
11860802 |
tcgagccacatcagaatctgaaagagctattagttgtcgggtaccatggccacatgttgtctaattggctcgcttcacttcaattccttggtaaatttac |
11860901 |
T |
|
| Q |
314 |
cttgaatgactgcccaaaatgcgaatttctcccgccaatggatgagcttccacatctcaaggt |
376 |
Q |
| |
|
|||||| ||||| || || ||| |||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
11860902 |
cttgaacgactgtcccaattgcaaatttctcccaccaatggatcagcttccacatctcaaggt |
11860964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 188 - 375
Target Start/End: Original strand, 11732448 - 11732635
Alignment:
| Q |
188 |
caacgacgagaagtcgcttgactgtcttgtgccaccttcgaatctgagagtgttattcattgtggggtacaatggtcacaccttgtctgactggctcggt |
287 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||| | ||| ||| ||| |||||||||| ||||||||||| | |||||| ||| | ||||||| | |
|
|
| T |
11732448 |
caacgacgagaagttacttgaatgtctccaaccacctcccaatttgaaagttctattcattgtagggtacaatggccgcaccttatctaaatggctcgat |
11732547 |
T |
|
| Q |
288 |
ttacttcattgtcttgttaagtttaccttgaatgactgcccaaaatgcgaatttctcccgccaatggatgagcttccacatctcaagg |
375 |
Q |
| |
|
| ||||| || ||||||||||||||||||| |||||| || |||||| ||||||| |||||||| ||| | |||||| ||||||||| |
|
|
| T |
11732548 |
tcgcttcaatgccttgttaagtttaccttgagtgactgtcctaaatgcaaatttctaccgccaatcgatcaccttccaaatctcaagg |
11732635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 11901954 - 11901853
Alignment:
| Q |
12 |
agagaactcaccgatctcaacaaactgagaggtcacatggaaatttcgcatctggaacaagtcaagttcttgcaatccaaggaaattgctaaagatgaat |
111 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| | ||||||| |||||||| |||||||||| ||||| | ||| |||||| |||| ||||||||| |
|
|
| T |
11901954 |
agagaactcacggatcttaacaatctgagaggccggttggaaatatcgcatctagaacaagtcatgttctctccatctaaggaagctgctcaagatgaat |
11901855 |
T |
|
| Q |
112 |
tt |
113 |
Q |
| |
|
|| |
|
|
| T |
11901854 |
tt |
11901853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 11732285 - 11732349
Alignment:
| Q |
49 |
tggaaatttcgcatctggaacaagtcaagttcttgcaatccaaggaaattgctaaagatgaattt |
113 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||| | |||||| ||| ||||||||||||||| |
|
|
| T |
11732285 |
tggaaattttgcatctggagcaagtcaagttctctccatccaacgaagcggctaaagatgaattt |
11732349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University