View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_low_25 (Length: 388)
Name: NF18565_low_25
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 41674733 - 41674510
Alignment:
| Q |
10 |
aagaatattgaagtgaaagcaaaacaaacttcttctaactcacataggcataagataacaataggagtaagtctttgagaaaacccatgtgtctaatttg |
109 |
Q |
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| T |
41674733 |
aagaatattgaagtgaaagcaaaacaagcttctgctaactcacataggcataagataacaataggagtaagtctttgagaaaactcatgtgtctaatttg |
41674634 |
T |
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| Q |
110 |
cagaaagagagagaagatgcagaaaatgaagaaccttgggagtattggaagcagtgggaggttttcaacagaagaatgtgaagatgaggatgtttcaaaa |
209 |
Q |
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| T |
41674633 |
cagaaagagagagaagatgcagaaaatgaagaaccttgggagtattggaagcagtgggaggttttcaacagaagaatgtgaagatgaggatgtttcaaaa |
41674534 |
T |
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| Q |
210 |
ttggccatttccacattacaagct |
233 |
Q |
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|||||||||||||||||||||||| |
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| T |
41674533 |
ttggccatttccacattacaagct |
41674510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 280 - 374
Target Start/End: Complemental strand, 41674463 - 41674369
Alignment:
| Q |
280 |
ttgaacttcaacttggacgtgccgaagaagagacaaggcgtttggctcacatttgggaagtaagttccatgtttagaaaaaacatatgtgatgaa |
374 |
Q |
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| T |
41674463 |
ttgaacttcaacttggacgtgccgaagaagagacaaggcgtttggctcacatttgggaagtaagttccatgtttagaaaaaacatatgtgatgaa |
41674369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 6276798 - 6276948
Alignment:
| Q |
10 |
aagaatattgaagtgaaagcaaaacaaacttcttctaactcacataggcataaga----taacaataggagtaagtctttgagaaaacccatgtgtctaa |
105 |
Q |
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|||| ||||||||||||||||| |||| ||||| ||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |
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| T |
6276798 |
aagagtattgaagtgaaagcaagacaagcttctgctaactcacataggcataagaaagataccaataggagtaagtctttgagaaaactcatgtgtctaa |
6276897 |
T |
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| Q |
106 |
tttgcagaaagagagagaagatgcagaaaatgaagaaccttgggagtattgga |
158 |
Q |
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||||| ||||||| | || |||||||||| |||||||||||||||||||||| |
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| T |
6276898 |
tttgc--aaagagataaaaaatgcagaaaacgaagaaccttgggagtattgga |
6276948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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