View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18565_low_27 (Length: 382)
Name: NF18565_low_27
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_low_27 |
 | |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 5918521 - 5918164
Alignment:
| Q |
18 |
tgttgtttctccattgacaagggataattatcaacctaacatgaaagtgttcatcaatggcaaaacatttttctacagggatatcgaggctgactatgag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
5918521 |
tgttgtttctccattgacaagggataattatcaacctaacgtgaaagtgttcatcaatggcaaaacatttttctacagggatgtcgaggctgactatgag |
5918422 |
T |
|
| Q |
118 |
tggccgatatcgtttcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5918421 |
tggccgatatcgtttcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtgg |
5918322 |
T |
|
| Q |
218 |
tagttgactttgggtttgaattccataaaagtggaatccatgtgttgaaagagaaaagtagtatgatggatatccaattcaccaatccagagaatgatgt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5918321 |
tagttgactttgggtttgaattccataaaagtggaatccatgtgttgaaagagaaaagtagtatgatggatatccaattcaccaatccagagaatgatgt |
5918222 |
T |
|
| Q |
318 |
taatatgggggttactctttaaaaccgaactcttaatcattgctcttaagctttgattctgatgt |
382 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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|
| T |
5918221 |
taatatgggggttactctttaaaaccaaactcttaa-------tcttaagctttgattctgatgt |
5918164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 132 - 341
Target Start/End: Complemental strand, 29662860 - 29662652
Alignment:
| Q |
132 |
tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg |
231 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||| |||| |||||||||||||||| |||||||||||| | ||||||||||| |
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| T |
29662860 |
tcatttacatctttttcatatgcaaactgaaaaattcaatgatgatatggacaaagcacttttagaaaataagtggaaccatgcagaggttgactttgga |
29662761 |
T |
|
| Q |
232 |
tttgaattccataaaagtggaatccatgtgttgaaagagaaaagtagtatgatggatatccaattcaccaatccagagaatgatgttaatatgggggtta |
331 |
Q |
| |
|
|| |||||| || ||||||||||||| |||||||||||||||| |||| ||||| | ||||||||| ||||||||||||| |||||| | | | | |
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| T |
29662760 |
ttcccattcca-gaatgtggaatccatgtattgaaagagaaaagtaacatgaatgatattcgattcaccaacccagagaatgatgctaatattgagttca |
29662662 |
T |
|
| Q |
332 |
ctctttaaaa |
341 |
Q |
| |
|
|||||||||| |
|
|
| T |
29662661 |
ctctttaaaa |
29662652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 132 - 316
Target Start/End: Complemental strand, 29755787 - 29755603
Alignment:
| Q |
132 |
tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg |
231 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||||| ||||||||| || |||| |||||||| ||||||| |||||||||||| || ||| |||||| |
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|
| T |
29755787 |
tcatttgcatctttttcatatgcaaatggaaaacttcaatgataatatggacaaagcactttcagaaaataagtggaaccatgcggaggttctctttgga |
29755688 |
T |
|
| Q |
232 |
tttgaattccataaaagtggaatccatgtgttgaaagagaaaagtagtatgatggatatccaattcaccaatccagagaatgatg |
316 |
Q |
| |
|
|| |||||| |||||||||||||||||| ||||||||||||| || ||| |||||| | ||||||||||||||||||||||| |
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|
| T |
29755687 |
ttcaaattccttaaaagtggaatccatgtattgaaagagaaaattaacttgaaggatattcgattcaccaatccagagaatgatg |
29755603 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 132 - 323
Target Start/End: Original strand, 29471949 - 29472140
Alignment:
| Q |
132 |
tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg |
231 |
Q |
| |
|
|||| ||||| |||||||||||||||| |||||||| ||| || || |||| |||||||||||||||| |||||||||||| | |||||||||||| |
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|
| T |
29471949 |
tcatctacatctttttcatatgcaaatggaaaaattgaataataatatggacaaagcacttttagaaaataagtggaaccatgcagaggttgactttggg |
29472048 |
T |
|
| Q |
232 |
tttgaattccataaaagtggaatccatgtgttgaaagagaaaagtagtatgatggatatccaattcaccaatccagagaatgatgttaatat |
323 |
Q |
| |
|
|| |||| | |||||||||||||| |||||| ||||||||| |||| |||||| ||||||||||| ||||| || |||| |||||| |
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|
| T |
29472049 |
ttcccattcatgtatagtggaatccatgtattgaaaaagaaaagtaacatgaaggatattcaattcaccaacccagataaagatgataatat |
29472140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 132 - 290
Target Start/End: Complemental strand, 29800017 - 29799859
Alignment:
| Q |
132 |
tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg |
231 |
Q |
| |
|
|||||| ||| |||| |||||||||| ||||| ||||||||| || ||||| | |||||||||||||| |||||||||||| ||| ||||||| |
|
|
| T |
29800017 |
tcatttgcatcttttccatatgcaaacggaaaacttcaatgataatatggataaatcacttttagaaaataagtggaaccatgcaaaggtttactttgga |
29799918 |
T |
|
| Q |
232 |
tttgaattccataaaagtggaatccatgtgttgaaagagaaaagtagtatgatggatat |
290 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||| ||||||| |||| |||||| |
|
|
| T |
29799917 |
ttcaaattccataaaagtggaatccatgtattgaaagctaaaagtaacatgaaggatat |
29799859 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 269
Target Start/End: Complemental strand, 28487605 - 28487468
Alignment:
| Q |
132 |
tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg |
231 |
Q |
| |
|
|||||| ||| |||| |||||||||| ||||| ||||||||| || ||||| | |||||||||||||| |||||||||||| ||| ||||||| |
|
|
| T |
28487605 |
tcatttgcatcttttccatatgcaaacggaaaacttcaatgataatatggataaatcacttttagaaaataagtggaaccatgcaaaggtttactttgga |
28487506 |
T |
|
| Q |
232 |
tttgaattccataaaagtggaatccatgtgttgaaaga |
269 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
28487505 |
ttcaaattccataaaagtggaatccatgtattgaaaga |
28487468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 133 - 277
Target Start/End: Complemental strand, 29711871 - 29711727
Alignment:
| Q |
133 |
catttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttgggt |
232 |
Q |
| |
|
||||| ||| |||||||| ||||||| ||||| ||||||||| || | || |||||||||||||||| |||||||||||| | ||||||||||| | |
|
|
| T |
29711871 |
catttgcatctttttcatttgcaaatggaaaatttcaatgataatatagacaaagcacttttagaaaataagtggaaccatgcagaggttgactttggat |
29711772 |
T |
|
| Q |
233 |
ttgaattccataaaagtggaatccatgtgttgaaagagaaaagta |
277 |
Q |
| |
|
| ||||| || |||||||||||||| |||||||||||||||| |
|
|
| T |
29711771 |
tccctttccagaatagtggaatccatgtattgaaagagaaaagta |
29711727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 132 - 316
Target Start/End: Complemental strand, 29767291 - 29767107
Alignment:
| Q |
132 |
tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg |
231 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||| | ||||||||| || |||| ||||||||||||||| | |||||||||| | ||||||||||| |
|
|
| T |
29767291 |
tcatttgcatctttttcatatgcaaatggaatacttcaatgataatatggacaaggcacttttagaaaataaatggaaccatgcagaggttgactttgga |
29767192 |
T |
|
| Q |
232 |
tttgaattccataaaagtggaatccatgtgttgaaagagaaaagtagtatgatggatatccaattcaccaatccagagaatgatg |
316 |
Q |
| |
|
|| |||| |||||||||||||| ||||||||||||||||| |||| ||||| | ||||||||| ||||||||||||| |
|
|
| T |
29767191 |
ttcccattcatgtttagtggaatccatgtattgaaagagaaaagtagcatgaaagatattcgattcaccaacccagagaatgatg |
29767107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 316
Target Start/End: Complemental strand, 29689315 - 29689131
Alignment:
| Q |
132 |
tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg |
231 |
Q |
| |
|
|||||| ||| |||||||||||||| | ||| | ||||||| | || ||||| |||||||||||||||| | |||||||||| | ||||||||||| |
|
|
| T |
29689315 |
tcatttgcatctttttcatatgcaagtggaatacttcaatggtaatatggataaagcacttttagaaaataaatggaaccatgcagaggttgactttgga |
29689216 |
T |
|
| Q |
232 |
tttgaattccataaaagtggaatccatgtgttgaaagagaaaagtagtatgatggatatccaattcaccaatccagagaatgatg |
316 |
Q |
| |
|
|| |||| |||||||||||||| ||||||||||| |||| |||| |||||| ||||||||||||||||||||||| |
|
|
| T |
29689215 |
ttcccattcatgtttagtggaatccatgtattgaaagagaagagtaacatgaaggatattagattcaccaatccagagaatgatg |
29689131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 132 - 309
Target Start/End: Complemental strand, 29671423 - 29671246
Alignment:
| Q |
132 |
tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg |
231 |
Q |
| |
|
|||||| ||| ||||||||||| |||| ||||| || |||||| || |||| || |||||| |||||| ||||||||||| | ||||| ||||| |
|
|
| T |
29671423 |
tcatttgcatctttttcatatgaaaatggaaaactttaatgataatatggaaaaagtactttttgaaaatatgtggaaccatgcagaggttgattttgga |
29671324 |
T |
|
| Q |
232 |
tttgaattccataaaagtggaatccatgtgttgaaagagaaaagtagtatgatggatatccaattcaccaatccagag |
309 |
Q |
| |
|
|| |||||| ||||||||||| ||||| | |||||||||||||| |||| |||||| |||||||||||||||| |
|
|
| T |
29671323 |
ttaccattccagaaaagtggaattcatgtatcgaaagagaaaagtaacatgaaggatattagattcaccaatccagag |
29671246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 214
Target Start/End: Complemental strand, 29718498 - 29718416
Alignment:
| Q |
132 |
tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatg |
214 |
Q |
| |
|
|||||| ||| ||||||||||||||| || || ||||||||| || |||| |||||||||||||||| |||||||||||| |
|
|
| T |
29718498 |
tcatttgcatctttttcatatgcaaacggagaacttcaatgataatatggacaaagcacttttagaaaataagtggaaccatg |
29718416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 132 - 310
Target Start/End: Original strand, 75133 - 75311
Alignment:
| Q |
132 |
tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg |
231 |
Q |
| |
|
||||||| || ||||||||||| ||| ||||||||||| ||| | |||| |||||||||||||||| |||||||||||| | |||||||||| |
|
|
| T |
75133 |
tcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttgga |
75232 |
T |
|
| Q |
232 |
tttgaattccataaaagtggaatccatgtgttgaaagagaaaagtagtatgatggatatccaattcaccaatccagaga |
310 |
Q |
| |
|
| |||| | |||||||||||| | ||||||||||||||||| |||| |||||| | ||||||||| ||||||| |
|
|
| T |
75233 |
tccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagaga |
75311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 12592393 - 12592475
Alignment:
| Q |
132 |
tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatg |
214 |
Q |
| |
|
|||||| ||| |||||||||||||||| || || ||||||||| || |||| |||||||||||||||| |||||||||||| |
|
|
| T |
12592393 |
tcatttgcatctttttcatatgcaaatggagaacttcaatgataatatggacaaagcacttttagaaaataagtggaaccatg |
12592475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 317
Target Start/End: Complemental strand, 208792 - 208607
Alignment:
| Q |
132 |
tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg |
231 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||||| |||||||| || |||| |||||| | ||||||| ||||||| |||| | |||| ||||| |
|
|
| T |
208792 |
tcatttgcatctttttcatatgcaaatggaaaacttcaatgaaaatatggacaaagcactctcagaaaataagtggaatcatgcagagcttgattttgga |
208693 |
T |
|
| Q |
232 |
tttgaattccataaaagtggaatccatgtgttgaaagagaaaagtagtatgatggatatccaattcaccaatccagagaatgatgt |
317 |
Q |
| |
|
| ||||| |||||||||||||||| |||||||||| |||||| |||| ||||| | ||||| ||| ||| || ||||||| |
|
|
| T |
208692 |
ctctcattcctggaaagtggaatccatgtattgaaagagagaagtagcatgaacgatattcgattcatcaacccaaagtatgatgt |
208607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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