View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_low_3 (Length: 690)
Name: NF18565_low_3
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 39940237 - 39939875
Alignment:
| Q |
1 |
acttttattcttataactaaaatttctactaatttcaacttgagaacgacccctcttaggcttcaaagacttccttaagtggtggcctttatagtctctc |
100 |
Q |
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| T |
39940237 |
acttttattcttataactaaaatttctactaatttcaacttgagcacgacccctcttaggcttcaaagacttccttaagtggtggcctttatagtctctc |
39940138 |
T |
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| Q |
101 |
cttctacgcgaaaacgatctgcttaattctgcagatactggaaggtgatatgaaaggctttcgtcgatgtattcttcttcattcatttccattctaaact |
200 |
Q |
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| T |
39940137 |
cttctacgcgaaaacgatctgcttaattctgcagatactggaaggtgatatgaaaggctttcgtcgatgtattcttcttcattcatttccattctaaact |
39940038 |
T |
|
| Q |
201 |
ttcttctcctcctcctcttgacattgtgtagtttaacacataagaaagtgcatgaatacacccaaatgtggaaacaagaagagaaacatgcccatatcaa |
300 |
Q |
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| T |
39940037 |
ttcttctcctcctcctcttgacattgtgtagtttaacacataagaaagtgcatgaatacacccaaatgtggaaacaagaagagaaacatgcccatatcaa |
39939938 |
T |
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| Q |
301 |
tttgcaagcagagtgacatagacatctaattatgcccaatttatacagtacatagaagaacag |
363 |
Q |
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| T |
39939937 |
tttgcaagcagagtgacatagacatctaattatgcccaatttatacagtacatagaagaacag |
39939875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 424 - 676
Target Start/End: Complemental strand, 39939814 - 39939562
Alignment:
| Q |
424 |
ggttggaatctgaaattgaaacatgttgtaatgaaatagcaaaacaattgaactcaccaatgtacaatagaacaaataccacggccaatctcaatagatt |
523 |
Q |
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| T |
39939814 |
ggttggaatctgaaattgaaacatgttgtaatgaaataccaaaacaattgaactcaccaatgtacaatagaacaaataccacggccaatctcaatagatt |
39939715 |
T |
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| Q |
524 |
agcaacacaaaaattttcgatataacaagagagatcccatgttggtccacatactgaactgaaaacatatataccaagtaagaagtcagttctctgctgc |
623 |
Q |
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| T |
39939714 |
agcaacacaaaaaatttcgatataacaagagagatcccatgttggtccacatactgaacttaaaacatatattccaagtaagaagtcagttctctgctgc |
39939615 |
T |
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| Q |
624 |
aggagaggcacacatttacaagcattatatgatatagctaggttgttaatttt |
676 |
Q |
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| T |
39939614 |
aggagaggcacacatttacaagcattatatgatatagctaggttgttaatttt |
39939562 |
T |
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