View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18565_low_31 (Length: 371)

Name: NF18565_low_31
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18565_low_31
NF18565_low_31
[»] chr7 (9 HSPs)
chr7 (25-268)||(24617435-24617671)
chr7 (301-353)||(12596443-12596495)
chr7 (301-353)||(18777032-18777084)
chr7 (302-353)||(28749582-28749633)
chr7 (298-353)||(10955375-10955430)
chr7 (310-353)||(19691906-19691949)
chr7 (310-353)||(47985216-47985259)
chr7 (310-351)||(24525934-24525975)
chr7 (312-353)||(48984091-48984132)
[»] chr6 (15 HSPs)
chr6 (298-353)||(27314778-27314833)
chr6 (301-353)||(13727663-13727715)
chr6 (308-353)||(19741237-19741282)
chr6 (308-353)||(21280340-21280385)
chr6 (300-353)||(21479283-21479336)
chr6 (298-353)||(27579089-27579144)
chr6 (303-353)||(23070903-23070953)
chr6 (301-350)||(24711159-24711208)
chr6 (301-353)||(12083654-12083706)
chr6 (299-353)||(30832681-30832734)
chr6 (301-353)||(33773900-33773951)
chr6 (310-353)||(17353768-17353811)
chr6 (310-353)||(27788936-27788979)
chr6 (308-353)||(235473-235518)
chr6 (311-351)||(1156033-1156073)
[»] scaffold0070 (1 HSPs)
scaffold0070 (300-353)||(1010-1063)
[»] chr5 (11 HSPs)
chr5 (300-353)||(31881604-31881657)
chr5 (301-353)||(15480243-15480295)
chr5 (301-353)||(19523093-19523145)
chr5 (311-353)||(34756628-34756670)
chr5 (301-353)||(22987481-22987534)
chr5 (308-353)||(36188033-36188078)
chr5 (301-349)||(16592863-16592911)
chr5 (301-349)||(30853266-30853314)
chr5 (300-353)||(2274797-2274850)
chr5 (310-353)||(16199040-16199083)
chr5 (308-353)||(27923892-27923937)
[»] chr4 (23 HSPs)
chr4 (300-353)||(10431456-10431509)
chr4 (301-353)||(55255080-55255132)
chr4 (300-349)||(37514557-37514606)
chr4 (301-353)||(5128997-5129049)
chr4 (301-353)||(32915297-32915349)
chr4 (301-353)||(45560718-45560770)
chr4 (301-353)||(47127981-47128033)
chr4 (308-353)||(17679224-17679269)
chr4 (309-353)||(48208458-48208502)
chr4 (310-350)||(54779450-54779490)
chr4 (315-353)||(1105445-1105483)
chr4 (320-353)||(9579483-9579516)
chr4 (320-353)||(9585178-9585211)
chr4 (320-353)||(38209855-38209888)
chr4 (311-351)||(13459794-13459834)
chr4 (310-350)||(27596656-27596696)
chr4 (301-348)||(10978144-10978191)
chr4 (310-353)||(24969251-24969294)
chr4 (311-353)||(32128402-32128444)
chr4 (308-345)||(23510922-23510959)
chr4 (308-353)||(54083492-54083537)
chr4 (313-353)||(16844839-16844879)
chr4 (314-350)||(35780573-35780609)
[»] chr3 (22 HSPs)
chr3 (300-353)||(54619467-54619520)
chr3 (301-353)||(36716289-36716341)
chr3 (301-353)||(38681361-38681413)
chr3 (302-353)||(3954866-3954917)
chr3 (299-348)||(29620618-29620667)
chr3 (301-353)||(13795187-13795239)
chr3 (301-353)||(27078832-27078884)
chr3 (301-353)||(27084629-27084681)
chr3 (298-350)||(42098695-42098747)
chr3 (301-353)||(50258748-50258800)
chr3 (300-353)||(47467581-47467633)
chr3 (300-349)||(53149475-53149524)
chr3 (300-350)||(1148371-1148421)
chr3 (301-351)||(21582668-21582718)
chr3 (320-353)||(36605865-36605898)
chr3 (310-353)||(48156951-48156994)
chr3 (310-353)||(53507131-53507174)
chr3 (311-353)||(43207488-43207530)
chr3 (310-351)||(9878935-9878976)
chr3 (312-353)||(44708293-44708334)
chr3 (308-353)||(50939482-50939527)
chr3 (301-353)||(18372033-18372084)
[»] chr8 (10 HSPs)
chr8 (301-353)||(2952486-2952538)
chr8 (301-353)||(5861009-5861061)
chr8 (301-353)||(20003890-20003942)
chr8 (301-353)||(30883110-30883162)
chr8 (312-353)||(3048787-3048828)
chr8 (308-353)||(42600591-42600636)
chr8 (300-347)||(37430321-37430368)
chr8 (303-353)||(41878167-41878217)
chr8 (308-353)||(10917201-10917246)
chr8 (297-349)||(45294597-45294649)
[»] chr2 (16 HSPs)
chr2 (301-353)||(3155003-3155055)
chr2 (301-353)||(3952899-3952951)
chr2 (301-353)||(4505679-4505731)
chr2 (303-353)||(6964794-6964844)
chr2 (301-350)||(7162677-7162726)
chr2 (300-353)||(12337703-12337756)
chr2 (301-353)||(34693147-34693199)
chr2 (301-353)||(34715559-34715611)
chr2 (302-353)||(40635963-40636014)
chr2 (298-348)||(5952949-5952998)
chr2 (308-353)||(8907343-8907388)
chr2 (308-353)||(27506989-27507034)
chr2 (301-353)||(3399509-3399561)
chr2 (310-353)||(26715940-26715983)
chr2 (311-353)||(9045842-9045884)
chr2 (308-353)||(24410243-24410288)
[»] chr1 (17 HSPs)
chr1 (301-353)||(14146205-14146257)
chr1 (301-353)||(41697293-41697345)
chr1 (301-353)||(44655539-44655591)
chr1 (301-353)||(27906962-27907014)
chr1 (309-351)||(6771704-6771746)
chr1 (301-347)||(50880568-50880614)
chr1 (301-350)||(3406323-3406372)
chr1 (301-350)||(3440448-3440497)
chr1 (308-353)||(6888476-6888521)
chr1 (301-353)||(16139960-16140012)
chr1 (308-353)||(13913730-13913775)
chr1 (308-353)||(40502038-40502083)
chr1 (310-353)||(1367125-1367168)
chr1 (310-349)||(10912112-10912151)
chr1 (310-353)||(44895476-44895519)
chr1 (313-350)||(5027991-5028028)
chr1 (310-346)||(23181720-23181756)
[»] scaffold0001 (1 HSPs)
scaffold0001 (299-346)||(181433-181480)


Alignment Details
Target: chr7 (Bit Score: 116; Significance: 6e-59; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 25 - 268
Target Start/End: Complemental strand, 24617671 - 24617435
Alignment:
Q  25 catcatacagccaatatatattcaacttatgataacggaaataaacaattattattctctaaatcctttatattttgtggtgtactgt--atcagcactt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||  ||||||  ||||| ||||    
T  24617671 catcatacagccaatatatattcaacttatgataacggaaataaacaattattattttctaaattctttatattttgtggcatactgttcatcagtactt 24617572  T
Q  123 catttttgttcttac-nnnnnnnnnnntacggactataggggtttacgtacttccttcatttatttatgtttacgccttaaaataacttagttgttagat 221  Q
    || |||||||| |||            |||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||    
T  24617571 cacttttgttcatacaaaataaatttatacggactataggggtttacgtacttccttcatttatttatgttt----------ataacttagttgttagat 24617482  T
Q  222 gaggacgacaagcagccgagttaagagtcacctgaacacgagataga 268  Q
     ||||||||||||||||||||||||| ||||| |||||||| |||||    
T  24617481 aaggacgacaagcagccgagttaagaatcacccgaacacgacataga 24617435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 12596495 - 12596443
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  12596495 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 12596443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 18777084 - 18777032
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||||||||||    
T  18777084 caggggcgtccctgaggaggtgcaaacagctcaaacgagctgggcctccctca 18777032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 28749582 - 28749633
Alignment:
Q  302 aggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||||||||||    
T  28749582 aggggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctca 28749633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 10955375 - 10955430
Alignment:
Q  298 gagcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||| |||| |||||| ||||||| |||||||||||| |||||||||||||    
T  10955375 gagcaggggcgtccttgagggggtgcaaatagctcaaacgagttgggcctccctca 10955430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 353
Target Start/End: Original strand, 19691906 - 19691949
Alignment:
Q  310 ccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||| |||||||||||||||  |||||||||||||||||    
T  19691906 ccctgagggggtgcaaacagctcaacagagctgggcctccctca 19691949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 353
Target Start/End: Complemental strand, 47985259 - 47985216
Alignment:
Q  310 ccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||| |||||||||||||||  |||||||||||||||||    
T  47985259 ccctgagggggtgcaaacagctcaacagagctgggcctccctca 47985216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 351
Target Start/End: Complemental strand, 24525975 - 24525934
Alignment:
Q  310 ccctgagggagtgcaaacagctcaaacgagctgggcctccct 351  Q
    ||||||||| |||||||||||||||  |||||||||||||||    
T  24525975 ccctgagggggtgcaaacagctcaacagagctgggcctccct 24525934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 48984132 - 48984091
Alignment:
Q  312 ctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||| |||||||||||||||  |||||||||||||||||    
T  48984132 ctgagggggtgcaaacagctcaacagagctgggcctccctca 48984091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 27314833 - 27314778
Alignment:
Q  298 gagcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  27314833 gagcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 27314778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 13727715 - 13727663
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  13727715 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 13727663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 19741282 - 19741237
Alignment:
Q  308 gtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  19741282 gtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 19741237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 21280340 - 21280385
Alignment:
Q  308 gtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  21280340 gtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 21280385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 21479283 - 21479336
Alignment:
Q  300 gcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||| ||||||||||| |||||||||||| |||||||||||||||||||||    
T  21479283 gcaggggcgtccctgagggggtgcaaacagctaaaacgagctgggcctccctca 21479336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 27579144 - 27579089
Alignment:
Q  298 gagcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||| |||||| |||| |||||| |||||||||||||||||||||||||||    
T  27579144 gagcaggggcgtccctaagggggtgcaaccagctcaaacgagctgggcctccctca 27579089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 23070953 - 23070903
Alignment:
Q  303 ggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||| |||| |||||| ||||||||||||||||||||||||||||||||||    
T  23070953 ggggcgtccttgagggggtgcaaacagctcaaacgagctgggcctccctca 23070903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 24711208 - 24711159
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccc 350  Q
    |||||| ||||||||||| ||||||||||||||||| |||||||||||||    
T  24711208 caggggcgtccctgagggggtgcaaacagctcaaacaagctgggcctccc 24711159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 12083706 - 12083654
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| |||| |||||| |||||||||||||||||||||||||||| |||||    
T  12083706 caggggcgtccttgagggggtgcaaacagctcaaacgagctgggccttcctca 12083654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 30832734 - 30832681
Alignment:
Q  299 agcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||||| |||| |||||| |||||||||||||||| |||||||||||||||||    
T  30832734 agcaggggcgtccttgaggg-gtgcaaacagctcaaatgagctgggcctccctca 30832681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 33773900 - 33773951
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| ||||||||| |||||| |||||||||||||||||    
T  33773900 caggggcgtccctgagggggtgcaaaca-ctcaaatgagctgggcctccctca 33773951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 353
Target Start/End: Original strand, 17353768 - 17353811
Alignment:
Q  310 ccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||| |||||||||||||||  |||||||||||||||||    
T  17353768 ccctgagggggtgcaaacagctcaacagagctgggcctccctca 17353811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 353
Target Start/End: Complemental strand, 27788979 - 27788936
Alignment:
Q  310 ccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||| |||||||||||||||  |||||||||||||||||    
T  27788979 ccctgagggggtgcaaacagctcaacagagctgggcctccctca 27788936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 235518 - 235473
Alignment:
Q  308 gtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||||| |||||||||||| ||  |||||||||||||||||    
T  235518 gtccctgagggggtgcaaacagcttaacagagctgggcctccctca 235473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 1156073 - 1156033
Alignment:
Q  311 cctgagggagtgcaaacagctcaaacgagctgggcctccct 351  Q
    |||||||| |||||||||||||||||||||| || ||||||    
T  1156073 cctgagggggtgcaaacagctcaaacgagctaggtctccct 1156033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 1010 - 1063
Alignment:
Q  300 gcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  1010 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 1063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 353
Target Start/End: Complemental strand, 31881657 - 31881604
Alignment:
Q  300 gcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  31881657 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 31881604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 15480295 - 15480243
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  15480295 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 15480243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 19523093 - 19523145
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  19523093 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 19523145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 34756670 - 34756628
Alignment:
Q  311 cctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  34756670 cctgagggggtgcaaacagctcaaacgagctgggcctccctca 34756628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 22987534 - 22987481
Alignment:
Q  301 caggggtgtccctgagggag-tgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| | |||||||||||||||||||||||||||||||||    
T  22987534 caggggcgtccctgaggggggtgcaaacagctcaaacgagctgggcctccctca 22987481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 36188078 - 36188033
Alignment:
Q  308 gtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  36188078 gtccctgagggggtgcaaacagctcaaacgagttgggcctccctca 36188033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 16592911 - 16592863
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctcc 349  Q
    |||||| ||||||||||| |||||||||||||||||||||||| |||||    
T  16592911 caggggcgtccctgagggggtgcaaacagctcaaacgagctggacctcc 16592863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 30853266 - 30853314
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctcc 349  Q
    |||||| |||||| |||| ||||||||||||||||||||||||||||||    
T  30853266 caggggcgtcccttagggggtgcaaacagctcaaacgagctgggcctcc 30853314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 2274797 - 2274850
Alignment:
Q  300 gcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||| || |||||||| |||||||||||||||| ||| |||||||||||||    
T  2274797 gcaggggcgttcctgagggggtgcaaacagctcaaatgagttgggcctccctca 2274850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 353
Target Start/End: Complemental strand, 16199083 - 16199040
Alignment:
Q  310 ccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||| |||||||||||||||  |||||||||||||||||    
T  16199083 ccctgagggggtgcaaacagctcaacagagctgggcctccctca 16199040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 27923892 - 27923937
Alignment:
Q  308 gtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||||| |||||||||||||||  ||||||| |||||||||    
T  27923892 gtccctgagggggtgcaaacagctcaacagagctggacctccctca 27923937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 353
Target Start/End: Complemental strand, 10431509 - 10431456
Alignment:
Q  300 gcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  10431509 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 10431456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 55255080 - 55255132
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  55255080 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 55255132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 300 - 349
Target Start/End: Original strand, 37514557 - 37514606
Alignment:
Q  300 gcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctcc 349  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  37514557 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctcc 37514606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 5129049 - 5128997
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| || |||||||| ||||||||||||||||||||||||||||||||||    
T  5129049 caggggcgttcctgagggggtgcaaacagctcaaacgagctgggcctccctca 5128997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 32915297 - 32915349
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| |||||||||||||||||||| |||||||||||||    
T  32915297 caggggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctca 32915349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 45560770 - 45560718
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||||||||||    
T  45560770 caggggcgtccttgagggggtgcaaacagctcaaacgagctgggcctccctca 45560718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 47127981 - 47128033
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||||||||||    
T  47127981 caggggcgtccctgagggggtgcaaacagcccaaacgagctgggcctccctca 47128033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 17679224 - 17679269
Alignment:
Q  308 gtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||    
T  17679224 gtccctgagggggtgcaaacagctcaaacgagctgagcctccctca 17679269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 48208458 - 48208502
Alignment:
Q  309 tccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  48208458 tccctgagggggtgcaaacagctcaaacgagttgggcctccctca 48208502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 54779450 - 54779490
Alignment:
Q  310 ccctgagggagtgcaaacagctcaaacgagctgggcctccc 350  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  54779450 ccctgagggagtgcaaacagctcaaccgagctgggcctccc 54779490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 353
Target Start/End: Original strand, 1105445 - 1105483
Alignment:
Q  315 agggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  1105445 agggggtgcaaacagctcaaacgagctgggcctccctca 1105483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 9579516 - 9579483
Alignment:
Q  320 gtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||||||||||||||||||||||||||||    
T  9579516 gtgcaaacagctcaaacgagctgggcctccctca 9579483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 9585211 - 9585178
Alignment:
Q  320 gtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||||||||||||||||||||||||||||    
T  9585211 gtgcaaacagctcaaacgagctgggcctccctca 9585178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 38209888 - 38209855
Alignment:
Q  320 gtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||||||||||||||||||||||||||||    
T  38209888 gtgcaaacagctcaaacgagctgggcctccctca 38209855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 13459794 - 13459834
Alignment:
Q  311 cctgagggagtgcaaacagctcaaacgagctgggcctccct 351  Q
    |||||||| ||||||||||||||||||||||| ||||||||    
T  13459794 cctgagggggtgcaaacagctcaaacgagctgagcctccct 13459834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 27596696 - 27596656
Alignment:
Q  310 ccctgagggagtgcaaacagctcaaacgagctgggcctccc 350  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  27596696 ccctgagggggtgcgaacagctcaaacgagctgggcctccc 27596656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 348
Target Start/End: Original strand, 10978144 - 10978191
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctc 348  Q
    |||||| ||||||||| | ||||||||||||||||||||||| |||||    
T  10978144 caggggcgtccctgagagggtgcaaacagctcaaacgagctgcgcctc 10978191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 353
Target Start/End: Original strand, 24969251 - 24969294
Alignment:
Q  310 ccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||| |||||||||||||||  |||||||||||||||||    
T  24969251 ccctgagggggtgcaaacagctcaacagagctgggcctccctca 24969294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 353
Target Start/End: Original strand, 32128402 - 32128444
Alignment:
Q  311 cctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||||| |||||||||||||||  |||||||||||||||||    
T  32128402 cctgagggggtgcaaacagctcaacagagctgggcctccctca 32128444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 23510959 - 23510922
Alignment:
Q  308 gtccctgagggagtgcaaacagctcaaacgagctgggc 345  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  23510959 gtccctgagggggtgcaaacagctcaaacgaactgggc 23510922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 54083537 - 54083492
Alignment:
Q  308 gtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||||| |||||||||||||||  ||||||||| |||||||    
T  54083537 gtccctgagggggtgcaaacagctcaatagagctgggcatccctca 54083492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 16844839 - 16844879
Alignment:
Q  313 tgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| |||||||||||||||  |||||||||||||||||    
T  16844839 tgagggggtgcaaacagctcaacagagctgggcctccctca 16844879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 350
Target Start/End: Complemental strand, 35780609 - 35780573
Alignment:
Q  314 gagggagtgcaaacagctcaaacgagctgggcctccc 350  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  35780609 gagggggtgcaaacagctcaaccgagctgggcctccc 35780573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 353
Target Start/End: Complemental strand, 54619520 - 54619467
Alignment:
Q  300 gcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  54619520 gcaggggtatccctgagggggtgcaaacagctcaaacgagctgggcctccctca 54619467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 36716341 - 36716289
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  36716341 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 36716289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 38681413 - 38681361
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  38681413 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 38681361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 302 - 353
Target Start/End: Complemental strand, 3954917 - 3954866
Alignment:
Q  302 aggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  3954917 aggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 3954866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 29620667 - 29620618
Alignment:
Q  299 agcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctc 348  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  29620667 agcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctc 29620618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 13795187 - 13795239
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||||||||||    
T  13795187 caggggcgtccttgagggcgtgcaaacagctcaaacgagctgggcctccctca 13795239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 27078884 - 27078832
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| || |||||||| ||||||||||||||||||||||||||||||||||    
T  27078884 caggggcgttcctgagggggtgcaaacagctcaaacgagctgggcctccctca 27078832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 27084681 - 27084629
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| || |||||||| ||||||||||||||||||||||||||||||||||    
T  27084681 caggggcgttcctgagggggtgcaaacagctcaaacgagctgggcctccctca 27084629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 350
Target Start/End: Original strand, 42098695 - 42098747
Alignment:
Q  298 gagcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccc 350  Q
    ||||||||| ||||||||||| |||||||||||||||||||| ||||||||||    
T  42098695 gagcaggggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccc 42098747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 50258800 - 50258748
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| |||||||||||||||| |||||||||||||||||    
T  50258800 caggggcgtccctgagggggtgcaaacagctcaaatgagctgggcctccctca 50258748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 47467581 - 47467633
Alignment:
Q  300 gcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||    
T  47467581 gcaggggcgtccctgaggg-gtgcaaacagctcaaacgagctgagcctccctca 47467633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 53149524 - 53149475
Alignment:
Q  300 gcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctcc 349  Q
    ||||||| |||||| |||| ||||||||||||||||||||||||||||||    
T  53149524 gcaggggcgtccctcagggggtgcaaacagctcaaacgagctgggcctcc 53149475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 350
Target Start/End: Complemental strand, 1148421 - 1148371
Alignment:
Q  300 gcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccc 350  Q
    |||||| || ||||||||| |||| ||||||||||||||||||||||||||    
T  1148421 gcagggctggccctgagggggtgcgaacagctcaaacgagctgggcctccc 1148371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 21582668 - 21582718
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccct 351  Q
    |||||| ||| ||||||| |||||||||||||||||||||||||| |||||    
T  21582668 caggggcgtctctgagggggtgcaaacagctcaaacgagctgggcatccct 21582718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 36605865 - 36605898
Alignment:
Q  320 gtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||||||||||||||||||||||||||||    
T  36605865 gtgcaaacagctcaaacgagctgggcctccctca 36605898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 353
Target Start/End: Original strand, 48156951 - 48156994
Alignment:
Q  310 ccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||| |||||||||||||||  |||||||||||||||||    
T  48156951 ccctgagggggtgcaaacagctcaacagagctgggcctccctca 48156994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 353
Target Start/End: Complemental strand, 53507174 - 53507131
Alignment:
Q  310 ccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||| |||||||||||||||  |||||||||||||||||    
T  53507174 ccctgagggggtgcaaacagctcaacagagctgggcctccctca 53507131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 43207530 - 43207488
Alignment:
Q  311 cctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||||| |||||||||||||||  |||||||||||||||||    
T  43207530 cctgagggggtgcaaacagctcaacagagctgggcctccctca 43207488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 351
Target Start/End: Complemental strand, 9878976 - 9878935
Alignment:
Q  310 ccctgagggagtgcaaacagctcaaacgagctgggcctccct 351  Q
    ||||||||| |||||||||||||||  |||||||||||||||    
T  9878976 ccctgagggggtgcaaacagctcaacagagctgggcctccct 9878935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 44708293 - 44708334
Alignment:
Q  312 ctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||| |||||||||||||||  |||||||||||||||||    
T  44708293 ctgagggggtgcaaacagctcaacagagctgggcctccctca 44708334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 50939527 - 50939482
Alignment:
Q  308 gtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||||  |||||||||||||||  |||||||||||||||||    
T  50939527 gtccctgaggaggtgcaaacagctcaacagagctgggcctccctca 50939482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 18372033 - 18372084
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||| ||||||| |||||||||| |||||||||||||| ||||||||    
T  18372033 caggggcgtctctgaggg-gtgcaaacagttcaaacgagctggggctccctca 18372084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 2952538 - 2952486
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  2952538 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 2952486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 5861061 - 5861009
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  5861061 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 5861009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 20003942 - 20003890
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  20003942 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 20003890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 30883110 - 30883162
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||| | ||||||||||||||||||||||||||||||||||    
T  30883110 caggggcgtccctgagtgggtgcaaacagctcaaacgagctgggcctccctca 30883162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 3048828 - 3048787
Alignment:
Q  312 ctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  3048828 ctgagggggtgcaaacagctcaaacgagctgggcctccctca 3048787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 42600591 - 42600636
Alignment:
Q  308 gtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||||| |||||||||||||||  |||||||||||||||||    
T  42600591 gtccctgagggggtgcaaacagctcaacagagctgggcctccctca 42600636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 347
Target Start/End: Complemental strand, 37430368 - 37430321
Alignment:
Q  300 gcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcct 347  Q
    ||||||| |||| |||||| |||||||||||||||||||| |||||||    
T  37430368 gcaggggcgtccttgagggggtgcaaacagctcaaacgagttgggcct 37430321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 41878167 - 41878217
Alignment:
Q  303 ggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||| |||| |||||| |||||||||||||||||||| || ||||||||||    
T  41878167 ggggcgtccttgagggggtgcaaacagctcaaacgagttgagcctccctca 41878217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 10917201 - 10917246
Alignment:
Q  308 gtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||| |||||| |||||||||||||||  |||||||||||||||||    
T  10917201 gtccttgagggggtgcaaacagctcaacagagctgggcctccctca 10917246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 45294649 - 45294597
Alignment:
Q  297 cgagcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctcc 349  Q
    |||||||||  |||| |||||| ||||||||||||| || |||||||||||||    
T  45294649 cgagcagggccgtccttgagggggtgcaaacagctctaatgagctgggcctcc 45294597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 3155003 - 3155055
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  3155003 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 3155055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 3952899 - 3952951
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  3952899 caggggtgtctctgagggggtgcaaacagctcaaacgagctgggcctccctca 3952951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 4505679 - 4505731
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  4505679 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 4505731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 6964794 - 6964844
Alignment:
Q  303 ggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  6964794 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 6964844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 7162677 - 7162726
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccc 350  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  7162677 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccc 7162726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 300 - 353
Target Start/End: Complemental strand, 12337756 - 12337703
Alignment:
Q  300 gcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||    
T  12337756 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgagcctccctca 12337703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 34693147 - 34693199
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| |||||||||||||||||||| |||||||||||||    
T  34693147 caggggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctca 34693199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 34715559 - 34715611
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| |||||||||||||||||||| |||||||||||||    
T  34715559 caggggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctca 34715611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 40635963 - 40636014
Alignment:
Q  302 aggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||| |||||| |||| |||||||||||||||||||| |||||||||||||    
T  40635963 aggggcgtccctaagggggtgcaaacagctcaaacgagttgggcctccctca 40636014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 5952998 - 5952949
Alignment:
Q  298 gagcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctc 348  Q
    |||| |||| ||||||||||| |||||||||||||||||||||||||||||    
T  5952998 gagctggggcgtccctgaggg-gtgcaaacagctcaaacgagctgggcctc 5952949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 8907388 - 8907343
Alignment:
Q  308 gtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||||| ||||||||||||||||| |||||| |||||||||    
T  8907388 gtccctgagggggtgcaaacagctcaaacaagctggacctccctca 8907343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 27507034 - 27506989
Alignment:
Q  308 gtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||||| |||||||||||||||  |||||||||||||||||    
T  27507034 gtccctgagggggtgcaaacagctcaacagagctgggcctccctca 27506989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 3399509 - 3399561
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| |||| |||||| |||||||||||||||||||| ||| |||||||||    
T  3399509 caggggcgtccttgagggggtgcaaacagctcaaacgagttggacctccctca 3399561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 353
Target Start/End: Original strand, 26715940 - 26715983
Alignment:
Q  310 ccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||| |||||||||||||||  |||||||||||||||||    
T  26715940 ccctgagggggtgcaaacagctcaacagagctgggcctccctca 26715983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 353
Target Start/End: Original strand, 9045842 - 9045884
Alignment:
Q  311 cctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||||| |||||||||||||||  |||||||||||||||||    
T  9045842 cctgagggggtgcaaacagctcaacagagctgggcctccctca 9045884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 24410243 - 24410288
Alignment:
Q  308 gtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| |||| |||||||||||||||  |||||||||||||||||    
T  24410243 gtccctaagggggtgcaaacagctcaacagagctgggcctccctca 24410288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 14146205 - 14146257
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  14146205 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 14146257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 41697345 - 41697293
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  41697345 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 41697293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 44655539 - 44655591
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  44655539 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 44655591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 27907014 - 27906962
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||||||||||    
T  27907014 caggggcgtccttgagggggtgcaaacagctcaaacgagctgggcctccctca 27906962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 6771704 - 6771746
Alignment:
Q  309 tccctgagggagtgcaaacagctcaaacgagctgggcctccct 351  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  6771704 tccctgagggggtgcaaacagctcaaacgagctgggcctccct 6771746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 50880568 - 50880614
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcct 347  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||    
T  50880568 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcct 50880614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 3406323 - 3406372
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccc 350  Q
    |||||| |||| |||||| |||||||||||||||||||||||||||||||    
T  3406323 caggggcgtccttgagggggtgcaaacagctcaaacgagctgggcctccc 3406372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 3440497 - 3440448
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccc 350  Q
    |||||| |||| |||||| |||||||||||||||||||||||||||||||    
T  3440497 caggggcgtccttgagggggtgcaaacagctcaaacgagctgggcctccc 3440448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 6888476 - 6888521
Alignment:
Q  308 gtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  6888476 gtccctgagggggtgcaaacagctcaaacgagttgggcctccctca 6888521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 16139960 - 16140012
Alignment:
Q  301 caggggtgtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    |||||| |||| |||||| |||||||||||||||||||| |||||||||||||    
T  16139960 caggggcgtccttgagggggtgcaaacagctcaaacgagttgggcctccctca 16140012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 13913775 - 13913730
Alignment:
Q  308 gtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||||| |||||||||||||||  |||||||||||||||||    
T  13913775 gtccctgagggggtgcaaacagctcaacagagctgggcctccctca 13913730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 40502083 - 40502038
Alignment:
Q  308 gtccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||||| |||||||||||||||  |||||||||||||||||    
T  40502083 gtccctgagggggtgcaaacagctcaacagagctgggcctccctca 40502038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 353
Target Start/End: Complemental strand, 1367168 - 1367125
Alignment:
Q  310 ccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||| |||||||||||||||  |||||||||||||||||    
T  1367168 ccctgagggggtgcaaacagctcaacagagctgggcctccctca 1367125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 10912151 - 10912112
Alignment:
Q  310 ccctgagggagtgcaaacagctcaaacgagctgggcctcc 349  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  10912151 ccctgagggggtgcgaacagctcaaacgagctgggcctcc 10912112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 353
Target Start/End: Original strand, 44895476 - 44895519
Alignment:
Q  310 ccctgagggagtgcaaacagctcaaacgagctgggcctccctca 353  Q
    ||||||||| |||||||||||||||  |||||||||||||||||    
T  44895476 ccctgagggggtgcaaacagctcaacagagctgggcctccctca 44895519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 5028028 - 5027991
Alignment:
Q  313 tgagggagtgcaaacagctcaaacgagctgggcctccc 350  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  5028028 tgagggggtgcaaacagctcaaccgagctgggcctccc 5027991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 23181720 - 23181756
Alignment:
Q  310 ccctgagggagtgcaaacagctcaaacgagctgggcc 346  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  23181720 ccctgagggggtgcaaacagctcaaccgagctgggcc 23181756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 346
Target Start/End: Original strand, 181433 - 181480
Alignment:
Q  299 agcaggggtgtccctgagggagtgcaaacagctcaaacgagctgggcc 346  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  181433 agcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcc 181480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University