View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_low_36 (Length: 319)
Name: NF18565_low_36
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 29 - 303
Target Start/End: Original strand, 32934814 - 32935088
Alignment:
| Q |
29 |
gcagaatatattgttaataagtgtatgtactatatattttcattataattgtgtggtattttgtgccctggatttaaattggcaaccttgtcatctttat |
128 |
Q |
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| T |
32934814 |
gcagaatatattgttaataagtgtttgtactatatattttcattataattgtgtggtattttgtgccctggatttaaattggcaaccttgtcatctttat |
32934913 |
T |
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| Q |
129 |
aggtgacagttaactacatattggggaatttgggaaaaagcttcacaaaaacagtgggagtaattgaccttggaggtggttcagttcaaatgacatatgc |
228 |
Q |
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| T |
32934914 |
aggtgacagttaactacatattggggaatttgggaaaaagcttcacaaaaacagtgggagtaattgaccttggaggtggttcagttcaaatgacatatgc |
32935013 |
T |
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| Q |
229 |
tgtgtcaaagaaaacagctaaaaatgctccaaaagttgcagatggagaggatccatatataaagaagcttgtact |
303 |
Q |
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| T |
32935014 |
tgtgtcaaagaaaacagctaaaaatgctccaaaagttgcagatggagaggatccatatataaagaagcttgtact |
32935088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 115 - 303
Target Start/End: Original strand, 32923793 - 32923981
Alignment:
| Q |
115 |
cttgtcatctttataggtgacagttaactacatattggggaatttgggaaaaagcttcacaaaaacagtgggagtaattgaccttggaggtggttcagtt |
214 |
Q |
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| T |
32923793 |
cttgtcatctttataggtgacagttaactatgcattggggaaattgggaaaaaaattcacaaaaacagtgggagtaatggatcttggaggtggatcagtt |
32923892 |
T |
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| Q |
215 |
caaatgacatatgctgtgtcaaagaaaacagctaaaaatgctccaaaagttgcagatggagaggatccatatataaagaagcttgtact |
303 |
Q |
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| T |
32923893 |
caaatggcatatgcagtgtcaaagtatacagctaaaaatgctccaaaagttgctgatggagaagatccatacattaagaagcttgtact |
32923981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 122 - 303
Target Start/End: Original strand, 32911800 - 32911981
Alignment:
| Q |
122 |
tctttataggtgacagttaactacatattggggaattt-gggaaaaagcttcacaaaaacagtgggagtaattgaccttggaggtggttcagttcaaatg |
220 |
Q |
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|||| |||||||||||||||||| |||||||||||| ||||||||| | ||||||||||||||||||||| || ||||||||||| |||||||||||| |
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| T |
32911800 |
tcttaataggtgacagttaactatgcattggggaatttagggaaaaag-tacacaaaaacagtgggagtaatggatcttggaggtggatcagttcaaatg |
32911898 |
T |
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| Q |
221 |
acatatgctgtgtcaaagaaaacagctaaaaatgctccaaaagttgcagatggagaggatccatatataaagaagcttgtact |
303 |
Q |
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| T |
32911899 |
gcatatgcagtgtcaaagaaaacagctaaaaatgctccaaaagttgctgatggagttgatccatacattaagaagcttgtact |
32911981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 115 - 303
Target Start/End: Original strand, 11823932 - 11824120
Alignment:
| Q |
115 |
cttgtcatctttataggtgacagttaactacatattggggaatttgggaaaaagcttcacaaaaacagtgggagtaattgaccttggaggtggttcagtt |
214 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||| |||| ||||||||||||||||||||||| || ||||||||||| || ||| |
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| T |
11823932 |
cttgtcatctttataggtgacagttaactatgcattggggactttggggaaaaaattcacaaaaacagtgggagtaatggatcttggaggtggatcggtt |
11824031 |
T |
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| Q |
215 |
caaatgacatatgctgtgtcaaagaaaacagctaaaaatgctccaaaagttgcagatggagaggatccatatataaagaagcttgtact |
303 |
Q |
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|||||| ||||||| ||||||| ||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |
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| T |
11824032 |
caaatggcatatgcagtgtcaaggaatacagctaaaaatgctccaaaagttgctgatggagatgatccatatattaagaagcttgtact |
11824120 |
T |
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