View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_low_37 (Length: 317)
Name: NF18565_low_37
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 11208898 - 11208610
Alignment:
| Q |
13 |
aatatggaacatgtatacaccaccagtgaacccaaccaaaatagtttatcaatttctgtttatgagggtgagaggcaaacaactaaggaaaacaacttgc |
112 |
Q |
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| T |
11208898 |
aatatggaagatgtatacaccaccagtgaacccaaccaaaatagtttatcaatttccgtttatgagggtgagaggcaaacaactaaggacaacaacttgc |
11208799 |
T |
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| Q |
113 |
ttggatcttttgagtttgaaattcctccacgtccaaaaggtgatcaaaaattcgtggtcaacttccaaattaacgatgatggcatcttagacgtctctgt |
212 |
Q |
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| T |
11208798 |
taggatcttttgagtttgaaattcctccatgtccaaaaggtgatcaaaaattcgtggtcaacttccaaattaacgatgatggcatcttagacgtctctgt |
11208699 |
T |
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| Q |
213 |
taccgagaaagccttcggaatcgataaaaggtttaaaatagtaaatgacaagggaagactgtcaaaggaggaagttgaaaggatgatca |
301 |
Q |
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| T |
11208698 |
tacggagaaagccttcggaatcgataaaaggtttaaaatagtaaatgacaagggaagactgtcaaaggaggaaattgagaggatgatca |
11208610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 69 - 299
Target Start/End: Complemental strand, 11170020 - 11169790
Alignment:
| Q |
69 |
tgtttatgagggtgagaggcaaacaactaaggaaaacaacttgcttggatcttttgagtttgaaattcctccacgtccaaaaggtgatcaaaaattcgtg |
168 |
Q |
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| T |
11170020 |
tgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctccacgtccaaaaggtgttctacatttcgtg |
11169921 |
T |
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| Q |
169 |
gtcaacttccaaattaacgatgatggcatcttagacgtctctgttaccgagaaagccttcggaatcgataaaaggtttaaaatagtaaatgacaagggaa |
268 |
Q |
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| T |
11169920 |
gtcaacttccaaattaacgatgatggcatcttagacgtctctgttacggaaaaagcctcgggaattgataaaaggtttaaaatagtaaatgacaagggaa |
11169821 |
T |
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| Q |
269 |
gactgtcaaaggaggaagttgaaaggatgat |
299 |
Q |
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| T |
11169820 |
gactgtcacaggaggaagttgataggatgat |
11169790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 71 - 301
Target Start/End: Complemental strand, 11275402 - 11275172
Alignment:
| Q |
71 |
tttatgagggtgagaggcaaacaactaaggaaaacaacttgcttggatcttttgagtttgaaattcctccacgtccaaaaggtgatcaaaaattcgtggt |
170 |
Q |
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| T |
11275402 |
tttatgagggtgagaggaaaacaactaaggacaacaacttgctaggaacttttaggtttgaaattcctccatgtccagtagatgttcctcaattggtggt |
11275303 |
T |
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| Q |
171 |
caacttccaaattaacgatgatggcatcttagacgtctctgttaccgagaaagccttcggaatcgataaaaggtttaaaatagtaaatgacaagggaaga |
270 |
Q |
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| T |
11275302 |
caacttccaaattgacaatgatggcatcttacagttgtctgtttcagaaaaagacttgggaattgataaaaggtttaaaatagtaaataacaagggaaga |
11275203 |
T |
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| Q |
271 |
ctgtcaaaggaggaagttgaaaggatgatca |
301 |
Q |
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| T |
11275202 |
ctgtcaaaagaggaaattgagaggatgatca |
11275172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 11155741 - 11155693
Alignment:
| Q |
69 |
tgtttatgagggtgagaggcaaacaactaaggaaaacaacttgcttgga |
117 |
Q |
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| T |
11155741 |
tgtttatgaaggtgagaggaaaataactagggaaaacaacttgcttgga |
11155693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 11196012 - 11195956
Alignment:
| Q |
245 |
ttaaaatagtaaatgacaagggaagactgtcaaaggaggaagttgaaaggatgatca |
301 |
Q |
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|||||||| ||| ||| ||||||||| |||||||||||||| |||| |||||||||| |
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| T |
11196012 |
ttaaaataataagtgataagggaagattgtcaaaggaggaaattgagaggatgatca |
11195956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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