View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_low_39 (Length: 306)
Name: NF18565_low_39
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 287
Target Start/End: Original strand, 39936628 - 39936905
Alignment:
| Q |
10 |
attatactctatgttcataaattgtttaggcggataaacttagcatctgctcatttaataaattgtttgttaaacaagataccctagtaagcttgcacca |
109 |
Q |
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| T |
39936628 |
attatactctatgttcataaattgtttaggcggataaacttagcatctgctcatttaataaattgtttgttaaacaagataccctagtaagcttgcacca |
39936727 |
T |
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| Q |
110 |
tgccaccatcagccagtggtggaacattacacaagcaattcagttgattagaaatgacatctatatatttgtgaccttaacaaaaggtcatgccactatc |
209 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39936728 |
tgccaccatcggccagtggtggaacattacacaagcaattcagttgattagaaatgacatctatatatttgtgaccttaacaaaaggtcatgccactatc |
39936827 |
T |
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| Q |
210 |
tagtagcaagttggtcatgtagtttcatttctgaaacagagagtacaacttatgcagatgatgtccatgggatgtggc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39936828 |
tagtagcaagttggtcatgtagtttcatttctgaaacagagagtacaacttatgcagatgatgtccatgggatgtggc |
39936905 |
T |
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Back To:
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 287
Target Start/End: Complemental strand, 29730151 - 29730123
Alignment:
| Q |
259 |
ttatgcagatgatgtccatgggatgtggc |
287 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
29730151 |
ttatgcagatgatgtccatgggatgtggc |
29730123 |
T |
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