View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_low_4 (Length: 684)
Name: NF18565_low_4
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 383 - 667
Target Start/End: Complemental strand, 8419986 - 8419702
Alignment:
| Q |
383 |
cagctctttaagaaaatggaccatttcccaccctttctgaaagaccaagatgatttacatgagctgaaacactttgaggaaatggatcaattgttgtgag |
482 |
Q |
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| T |
8419986 |
cagctctttaagaaaatggatcatttcccaccctttctgaaagaccaagatgatttacatgagctgaaacactttgaggaaatggatcaattgttgtgag |
8419887 |
T |
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| Q |
483 |
tgagccaaaacaagaacaaccaaatctttggttgaagaagagtatgaatcattagagttgaaaagtgatagcatcaagaacaacccaccatcaattgaag |
582 |
Q |
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| T |
8419886 |
tgagccaaaacaagaacaaccaaatctttggttgaagaaaagtatgaatcattatagttgaaaagtgatagcatcaagaacaacccaccatcaattgaag |
8419787 |
T |
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| Q |
583 |
caccgccacttttagagctgaaacaacttcctcccaccttaaagtatgcttacttgggtgagaatgaaacacttcatgttatttt |
667 |
Q |
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| T |
8419786 |
caccgccacttttagagctgaaacaacttcctcccaccttaaagtatgcttacttgggtgagaatgaaacacttcctgttatttt |
8419702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 8420424 - 8420137
Alignment:
| Q |
1 |
cttgaatgatgacttgacaagtatcctcctcctcctctagtagtgaagcttttggtgaagagtacagttgccaagaagtaaactatcacaagttatgatt |
100 |
Q |
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| T |
8420424 |
cttgaatgatgacttgacaagtatcctcctcctcctctagtagtgaagcttttggtgaagagtacagttgccaagaagtaaactatcacaagttatgatt |
8420325 |
T |
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| Q |
101 |
tggatagttgtgtttttggaaaatttcagaccttgttttgggatgcaaatgatattattactannnnnnnnnnnnaaaacttcaacttagatgttcattt |
200 |
Q |
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| T |
8420324 |
tggatagttgtgtttttggaaaatttcagaccttgttttgggatgcaaatgatatcattacta----ttttttttaaaacttcaacttagatgttcattt |
8420229 |
T |
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| Q |
201 |
aatcattgtagtctatggctatatgggattcaattattatatattattctcttggtttgtataccaattcactcttcatttatttaaactac |
292 |
Q |
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| T |
8420228 |
aatcattatagtctatggttatatgggattcaattattatatattattctcttggtttgtataccaattcactcttcatttatttaaactac |
8420137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 8643516 - 8643484
Alignment:
| Q |
1 |
cttgaatgatgacttgacaagtatcctcctcct |
33 |
Q |
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| T |
8643516 |
cttgaatgatgacttgacaagtaccctcctcct |
8643484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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