View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18565_low_41 (Length: 304)

Name: NF18565_low_41
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18565_low_41
NF18565_low_41
[»] chr4 (2 HSPs)
chr4 (137-186)||(42060268-42060317)
chr4 (182-242)||(42059568-42059628)
[»] chr3 (1 HSPs)
chr3 (137-180)||(17027-17070)
[»] chr8 (1 HSPs)
chr8 (137-186)||(37811377-37811426)
[»] chr2 (1 HSPs)
chr2 (182-231)||(12332002-12332051)
[»] chr1 (4 HSPs)
chr1 (182-231)||(4433967-4434016)
chr1 (182-231)||(25665762-25665811)
chr1 (181-233)||(49359677-49359729)
chr1 (181-233)||(49361935-49361987)


Alignment Details
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 42060268 - 42060317
Alignment:
Q  137 cttttgggaagatggctatggcggaacaccaaccagctacgtttcctttt 186  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42060268 cttttgggaagatggctatggcggaacaccaaccagctatgtttcctttt 42060317  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 42059628 - 42059568
Alignment:
Q  182 cttttaatcacaaccatctaattaattcattggcctctatttcatcctctcatttgaaatg 242  Q
    ||||||||||||  |||||||||||| |||||||| |||||| ||| ||||| ||||||||    
T  42059628 cttttaatcacattcatctaattaatccattggccactattttatcatctcacttgaaatg 42059568  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 17027 - 17070
Alignment:
Q  137 cttttgggaagatggctatggcggaacaccaaccagctacgttt 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  17027 cttttgggaagatggctatggcggaacaccaaccagctacgttt 17070  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 37811426 - 37811377
Alignment:
Q  137 cttttgggaagatggctatggcggaacaccaaccagctacgtttcctttt 186  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  37811426 cttttggaaagatggctatggcggaaaaccaaccagctacgtttcctttt 37811377  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 12332002 - 12332051
Alignment:
Q  182 cttttaatcacaaccatctaattaattcattggcctctatttcatcctct 231  Q
    |||||||||||| ||||||||||||| || ||||| || |||||||||||    
T  12332002 cttttaatcacagccatctaattaatccaatggccactgtttcatcctct 12332051  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 4434016 - 4433967
Alignment:
Q  182 cttttaatcacaaccatctaattaattcattggcctctatttcatcctct 231  Q
    |||||||||||| ||||||||||||| || ||||| || |||||||||||    
T  4434016 cttttaatcacagccatctaattaatccaatggccactgtttcatcctct 4433967  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 25665811 - 25665762
Alignment:
Q  182 cttttaatcacaaccatctaattaattcattggcctctatttcatcctct 231  Q
    |||||||||||| ||||||||||||| || ||||| || |||||||||||    
T  25665811 cttttaatcacagccatctaattaatccaatggccactgtttcatcctct 25665762  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 49359729 - 49359677
Alignment:
Q  181 ccttttaatcacaaccatctaattaattcattggcctctatttcatcctctca 233  Q
    ||||||||||||| |||||||| |||| || ||||| || |||||||||||||    
T  49359729 ccttttaatcacagccatctaactaatccaatggccactgtttcatcctctca 49359677  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 49361935 - 49361987
Alignment:
Q  181 ccttttaatcacaaccatctaattaattcattggcctctatttcatcctctca 233  Q
    ||||||||||||| |||||||| |||||||  |||| || |||||||||||||    
T  49361935 ccttttaatcacagccatctaactaattcaacggccactgtttcatcctctca 49361987  T

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