View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_low_43 (Length: 281)
Name: NF18565_low_43
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_low_43 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 281
Target Start/End: Original strand, 21548807 - 21549076
Alignment:
| Q |
10 |
aagaatataaactacctgattaaattgaaacttgaaacctttattttttccattaaatattgaaaccaataattgtagaaaatctcacacttatggcaaa |
109 |
Q |
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| T |
21548807 |
aagaaaataaattacctgattaaactgaaacttaaagcctttattttt-ccatta--tattgaaaccaaaaattgtagaaaatctcacacttatgacaaa |
21548903 |
T |
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| Q |
110 |
gaacaaaagtgaaacatcacaaaatagaacataaaatgtcaccattgtaagcaaca-ttttaacatgcaggagcgaataataactaaattcaaagatcta |
208 |
Q |
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| T |
21548904 |
gaataaaagtgaagcatcacaaaatagaacataaaatgtcaccattgtaagcaacaattttaacatgcaggagcgaataataactaaattcaaagatcta |
21549003 |
T |
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| Q |
209 |
taatctgtcttgttttcctggactagatagaaagttgtataaactaaacatagttgcagcaaacgcgaaagat |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||| |
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| T |
21549004 |
taatctgtcttgttttcctggactagatagaaagttgtaaaaactaaacatagttgcagctaccgccaaagat |
21549076 |
T |
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