View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_low_44 (Length: 277)
Name: NF18565_low_44
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_low_44 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 11697199 - 11696939
Alignment:
| Q |
17 |
actttacaagcacttaaaaggctcctccaaattacatcattaggcttgattgacatgctctttatgagttcataggcttcctttagcatcccaaatcttc |
116 |
Q |
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| T |
11697199 |
actttacaagcacttaaaaggctcctccaaattacatcattaggcttgattgacatgctctttatgagttcataggcttcctttagcatcccaaatcttc |
11697100 |
T |
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| Q |
117 |
ccaacagatccaccatgcaaccataatgctgaactgttggttcaatcgtatgctcaaattgcatgcttttgaaacattgtagaccctcctcgacaagacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11697099 |
ccaacagatccaccatgcaaccataatgctgaaccgttggttcaatcttatgctcaaattgcatgcttttgaaacattgtagaccctcctcgacaagacc |
11697000 |
T |
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| Q |
217 |
agcatgactgcaagcactaaatacgccaacatagacaacatcatctggtgccaaaccttct |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11696999 |
agcatgactgcaagcactaaatacgccaacatagacaacatcatctggtgccaaaccttct |
11696939 |
T |
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