View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_low_48 (Length: 237)
Name: NF18565_low_48
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3298905 - 3299125
Alignment:
| Q |
1 |
atttggagcagatcagcgtttggaccaatcttactatgcttagtcatattatgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgttt |
100 |
Q |
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| T |
3298905 |
atttggagcagatcagcgtttggaccaatcttactatgcttagtcatattatgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgttt |
3299004 |
T |
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| Q |
101 |
caatagcttatctgatgctacggatgttgtcaatcttatagtggacatacttccttccaaggttcagttgaatatgaatatgattcctcctcaagaaaga |
200 |
Q |
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| T |
3299005 |
caatagcttatctgatgctacggatgttgtcaatcttatagtggacatacttccttccaaggttcggttgaatatgaatatgattcctcctgaagaaaga |
3299104 |
T |
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| Q |
201 |
tgcattttttctgttgaaatc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
3299105 |
tgcattttttctgttgaaatc |
3299125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3391798 - 3392018
Alignment:
| Q |
1 |
atttggagcagatcagcgtttggaccaatcttactatgcttagtcatattatgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgttt |
100 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3391798 |
atttggagcagatcagcgtttggaccaattttactaagcttagtcatattatgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgttt |
3391897 |
T |
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| Q |
101 |
caatagcttatctgatgctacggatgttgtcaatcttatagtggacatacttccttccaaggttcagttgaatatgaatatgattcctcctcaagaaaga |
200 |
Q |
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| T |
3391898 |
caatagcttatctgatgctacggatgttgtcaatcttatagtggacatacttccttccaaggttcggttgaatatgaatatgattcctcctgaagaaaga |
3391997 |
T |
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| Q |
201 |
tgcattttttctgttgaaatc |
221 |
Q |
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| T |
3391998 |
tgcattttttctgttgaaatc |
3392018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 168
Target Start/End: Complemental strand, 1164297 - 1164208
Alignment:
| Q |
79 |
atgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtcaatcttatagtggacatacttccttccaaggttcagt |
168 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||||||| |
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| T |
1164297 |
atgaaggtttgtctttctatttcaatagcttatctgatgctgcggaagttgtcaatcttatagtggacatacttcctgcccaggttcagt |
1164208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 168
Target Start/End: Original strand, 1849467 - 1849558
Alignment:
| Q |
77 |
cgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtcaatcttatagtggacatacttccttccaaggttcagt |
168 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| || | ||||||||||||||| || |||||||||| || |||||||| |
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| T |
1849467 |
cgatgaaggtttgtctttctgtttcaatagcatatctgatgctgcgaaagttgtcaatcttataacgggcatacttcctgccctggttcagt |
1849558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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