View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_low_53 (Length: 222)
Name: NF18565_low_53
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 10 - 189
Target Start/End: Original strand, 29584863 - 29585041
Alignment:
| Q |
10 |
aagaatatttagaaactttaggtgtatggtatcatgtaattcaaccacaatatgattgaaatctggtgacatacatctaaaaacaatatnnnnnnnctaa |
109 |
Q |
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| T |
29584863 |
aagaaaatttagaaactttaggtgtatggtatcatgtaattcaaccacaatatgattgaaatctggtgacatacatctaaaaacaatatacagcaactaa |
29584962 |
T |
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| Q |
110 |
tagtgcagattaaacccaatgttagtcannnnnnnatttgatgcagtaccaagacatagagaatggatttagggtgagag |
189 |
Q |
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| T |
29584963 |
cagtgcagattaaacccaatgttagtca-tttttaatttgatgcagtactaagacagagagaatggatttagggtgagag |
29585041 |
T |
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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 4444539 - 4444465
Alignment:
| Q |
7 |
tcgaagaatatttagaaactttaggtgtatggtatcatgtaattcaaccacaatatgattgaaatctggtgacat |
81 |
Q |
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| T |
4444539 |
tcgaagaaaatttagaaactttgaaggtatggtattatgtaattccaccgcaatataattgaaatatagtgacat |
4444465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 8342010 - 8341950
Alignment:
| Q |
145 |
atttgatgcagtaccaagacatagagaatggatttagggtgagagtacacaccttatatat |
205 |
Q |
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| T |
8342010 |
atttgatgaagtagtaagacagagagaatggattgagggagagagttcaaaccttatatat |
8341950 |
T |
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