View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18565_low_6 (Length: 581)

Name: NF18565_low_6
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18565_low_6
NF18565_low_6
[»] scaffold0065 (1 HSPs)
scaffold0065 (1-574)||(41899-42479)
[»] chr7 (7 HSPs)
chr7 (19-575)||(26177127-26177667)
chr7 (119-408)||(19159943-19160235)
chr7 (119-408)||(20759342-20759634)
chr7 (268-365)||(7811231-7811328)
chr7 (195-253)||(6670736-6670794)
chr7 (454-519)||(7811420-7811485)
chr7 (56-112)||(12686549-12686605)
[»] chr3 (7 HSPs)
chr3 (51-575)||(2289501-2290030)
chr3 (183-575)||(20304077-20304478)
chr3 (180-408)||(15408904-15409134)
chr3 (1-63)||(20304022-20304084)
chr3 (155-235)||(3570223-3570304)
chr3 (182-253)||(41760648-41760719)
chr3 (195-253)||(51464881-51464939)
[»] chr5 (3 HSPs)
chr5 (183-575)||(37634812-37635206)
chr5 (195-253)||(25802765-25802823)
chr5 (462-542)||(21345766-21345846)
[»] scaffold0741 (1 HSPs)
scaffold0741 (183-571)||(5989-6383)
[»] chr8 (2 HSPs)
chr8 (179-569)||(25820086-25820481)
chr8 (182-253)||(33858666-33858737)
[»] chr6 (4 HSPs)
chr6 (180-408)||(25823072-25823302)
chr6 (180-408)||(16170767-16170996)
chr6 (155-253)||(21273124-21273225)
chr6 (266-365)||(23667397-23667496)
[»] chr2 (8 HSPs)
chr2 (119-408)||(21862057-21862349)
chr2 (467-556)||(15042331-15042420)
chr2 (182-243)||(22834162-22834223)
chr2 (476-544)||(29807102-29807170)
chr2 (183-253)||(18857023-18857093)
chr2 (269-365)||(22834252-22834348)
chr2 (329-368)||(29807281-29807320)
chr2 (143-221)||(29807433-29807512)
[»] chr1 (8 HSPs)
chr1 (137-330)||(46137016-46137213)
chr1 (182-241)||(15199597-15199656)
chr1 (155-230)||(36776872-36776948)
chr1 (157-253)||(9133247-9133345)
chr1 (194-253)||(159161-159220)
chr1 (181-236)||(15218684-15218739)
chr1 (311-365)||(159281-159335)
chr1 (460-540)||(15218954-15219034)
[»] chr4 (3 HSPs)
chr4 (155-243)||(1656499-1656588)
chr4 (266-365)||(21278862-21278961)
chr4 (182-253)||(31924333-31924404)
[»] scaffold0073 (1 HSPs)
scaffold0073 (155-253)||(40606-40706)
[»] scaffold0044 (1 HSPs)
scaffold0044 (467-543)||(60965-61041)


Alignment Details
Target: scaffold0065 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Complemental strand, 42479 - 41899
Alignment:
Q  1 gcccacatttcaggaatcagaggctccctattattcttagtaacacatacatttatccaaaaccaactcggagtagaatcataataaaccataggttccg 100  Q
    |||||||| | |||||  |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || || |||||||||||||||||||||    
T  42479 gcccacatgttaggaacgagaggctccccattattcttagtaacacatacatttctccaaaaccaactcggaataaaagcataataaaccataggttccg 42380  T
Q  101 caataaataccaatg-cggattatgtagccgacaccaatcagagaaagcaagtcaggaatcattattaccaattctccaatgttccaaaaaa--tgatat 197  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||  ||||||    
T  42379 caataaatacccatgacggattatgtagccgacaccaatcagagaaagcaagtcagg--tcattattaccaattctccgatgttccaaaaaaaatgatat 42282  T
Q  198 tcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgcatannnnnnnnnat---gagacttggaaacaacctctgtaaatgg 294  Q
    |||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||| |          |   |||||||||||||||| | |||||||||    
T  42281 tcatttaaacggtggaagaggaccctgagagtgggttttatataaaactttttgcaaattctttttttttctgagacttggaaacaacatttgtaaatgg 42182  T
Q  295 tacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaacccttcagaaccacaatacta 394  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||    
T  42181 tacctcggttgttgctgcctttgatagccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaaccctccggagccacaatacta 42082  T
Q  395 ctgatatcaagagttttattttttacggcagataaattagatatagtatttccctcaag---atttgcaactatatcatcggaaacattctcaagctgca 491  Q
    ||||| |||||||||||||||||||||| |||||||  |||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||    
T  42081 ctgatgtcaagagttttattttttacgggagataaaaaagatatagtatttccctcaagattattagcaactatatcatcggaaacattctcaagctgca 41982  T
Q  492 tactaaaagtattattctgaataacaggattatgagaagtatgagttaccacaggtgacggaattccttccggagtgtctgtg 574  Q
    |||||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||    
T  41981 tactaaaattattattctgaataacaggactatgagaagtatgaattatcacaggtgacggaattcctcccggagtgtttgtg 41899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 575
Target Start/End: Complemental strand, 26177667 - 26177127
Alignment:
Q  19 agaggctccctattattcttagtaacacatacatttatccaaaaccaactcggagtagaatcataataaaccataggttccgcaataaataccaatg-cg 117  Q
    ||||||||||| |||||||||||||||||||||||   |||||||||||||||| || || |||||||||||||||||||||||||||||| | ||| ||    
T  26177667 agaggctccctgttattcttagtaacacatacattcccccaaaaccaactcggaataaaagcataataaaccataggttccgcaataaataaccatgacg 26177568  T
Q  118 gattatgtagccgacaccaatcagagaaagcaagtcaggaatcattattaccaattctccaatgttccaaaaaatgatattcatataaaccgtggaagag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||    
T  26177567 gattatgtagccgacaccaatcagagaaagcaagtcaggaatcatgattaccaattctccgatgttccaaaaaatgatattcatttaaacggtggaagag 26177468  T
Q  218 gaccctgagagcgggttttatatgaaactttttgcata----nnnnnnnnnatgagacttggaaacaacctctgtaaatggtacctcggttgctgctgcc 313  Q
    |||||||||||||||||||||| |||||||||||||||              ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  26177467 gaccctgagagcgggttttatacgaaactttttgcatattcttttttttttctgagacttggaaacaacctgtgtaaatggtacctcggttgttgctgcc 26177368  T
Q  314 tttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaacccttcagaaccacaatactactgatatcaagagttttat 413  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | || ||||||||||||||||||||||||||||||    
T  26177367 tttgatagccaagtgtgcataaaatctaagtctttttgttgcaccggatctatcttagaatcctccggagccacaatactactgatatcaagagttttat 26177268  T
Q  414 tttttacggcagataaattagatatagtatttccctcaagatttgcaactatatcatcggaaacattctcaagctgcatactaaaagtattattctgaat 513  Q
    ||||||||| |||||||  |||||||||||||||||||||||       ||| ||            ||||||||||||||||||| |||||||||||||    
T  26177267 tttttacgggagataaaacagatatagtatttccctcaagat-------tatttc-----------cctcaagctgcatactaaaattattattctgaat 26177186  T
Q  514 aacaggattatgagaagtatgagttaccacaggtgacggaattccttccggagtgtctgtgc 575  Q
    ||||||| |   |||||||||||||||||||||||||||||||||| ||| | |||||||||    
T  26177185 aacaggact---agaagtatgagttaccacaggtgacggaattcctcccgtaatgtctgtgc 26177127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 119 - 408
Target Start/End: Complemental strand, 19160235 - 19159943
Alignment:
Q  119 attatgtagccgacaccaatcagagaaagcaagtcaggaatcattattaccaattctccaa-tgttccaaaaaatgatattcatataaaccgtggaagag 217  Q
    ||||||||||||||||  ||||||||||||||||| | ||||| |||||||||||  || | | |||||||| || ||||| || ||||| |||||||||    
T  19160235 attatgtagccgacacatatcagagaaagcaagtcggtaatcaatattaccaatttcccgagttttccaaaagataatatttatttaaacggtggaagag 19160136  T
Q  218 gaccctgagagcgggttttatatgaaactttttgcatannnnnnnnnat--gagacttggaaacaacctctgtaaatggtacctcggttgctgctgcctt 315  Q
    |||||||||||||||||||||||| |||||||| ||||          |  |||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  19160135 gaccctgagagcgggttttatatggaactttttccatatttttcttcttctgagaattggaaacaacctctataaatggtacctcggttgctgctgcctt 19160036  T
Q  316 tgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaacccttcagaaccacaatactactgatatcaagagt 408  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || ||||||| |||||||||||| ||||    
T  19160035 tgatagccaagtgtgcatgaaatctaagtctttttgtagcaccggatctatcttagaaccctccggagccacaatgctactgatatcatgagt 19159943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 119 - 408
Target Start/End: Complemental strand, 20759634 - 20759342
Alignment:
Q  119 attatgtagccgacaccaatcagagaaagcaagtcaggaatcattattaccaattctccaa-tgttccaaaaaatgatattcatataaaccgtggaagag 217  Q
    ||||||||||||||||  ||||||||||||||||| | ||||| |||||||||||  || | | |||||||| || ||||| || ||||| |||||||||    
T  20759634 attatgtagccgacacatatcagagaaagcaagtcggtaatcaatattaccaatttcccgagttttccaaaagataatatttatttaaacggtggaagag 20759535  T
Q  218 gaccctgagagcgggttttatatgaaactttttgcatannnnnnnnnat--gagacttggaaacaacctctgtaaatggtacctcggttgctgctgcctt 315  Q
    |||||||||||||||||||||||| |||||||| ||||          |  |||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  20759534 gaccctgagagcgggttttatatggaactttttccatatttttcttcttctgagaattggaaacaacctctataaatggtacctcggttgctgctgcctt 20759435  T
Q  316 tgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaacccttcagaaccacaatactactgatatcaagagt 408  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || ||||||| |||||||||||| ||||    
T  20759434 tgatagccaagtgtgcatgaaatctaagtctttttgtagcaccggatctatcttagaaccctccggagccacaatgctactgatatcatgagt 20759342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 365
Target Start/End: Original strand, 7811231 - 7811328
Alignment:
Q  268 agacttggaaacaacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatcta 365  Q
    |||||| ||||| ||||||||||||||| | || ||  | |||||||  | |  |||||| ||||||||||||||||||||||| |||||||||||||    
T  7811231 agactttgaaactacctctgtaaatggtgcatcagtcacagctgcctccgctaaccaagtttgcataaaatctaagtctttttgcagcaccggatcta 7811328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 6670736 - 6670794
Alignment:
Q  195 tattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgca 253  Q
    ||||||| ||||| | |||||||||||||||||||||||||| |||||| | |||||||    
T  6670736 tattcatttaaacggaggaagaggaccctgagagcgggttttgtatgaagccttttgca 6670794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 454 - 519
Target Start/End: Original strand, 7811420 - 7811485
Alignment:
Q  454 atttgcaactatatcatcggaaacattctcaagctgcatactaaaagtattattctgaataacagg 519  Q
    ||||| |||||| ||||| |||||||||||||| ||||  |||||||||||||| || ||||||||    
T  7811420 atttgtaactatctcatcagaaacattctcaagttgcaagctaaaagtattattatgtataacagg 7811485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 12686549 - 12686605
Alignment:
Q  56 tccaaaaccaactcggagtagaatcataataaaccataggttccgcaataaatacca 112  Q
    ||||||||||| ||||| |||||||||| |  ||||||||||| |||||||| ||||    
T  12686549 tccaaaaccaattcggaatagaatcatactccaccataggttctgcaataaaaacca 12686605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 51 - 575
Target Start/End: Original strand, 2289501 - 2290030
Alignment:
Q  51 atttatccaaaaccaactcggagtagaatcataataaaccataggttccgcaataaataccaatg-cggattatgtagccgacaccaatcagagaaagca 149  Q
    |||| ||||||||||||||||| ||||| |||||||||||||||||||  ||||||||||||||| | |||||| |||||||| |  || |||||||||     
T  2289501 atttctccaaaaccaactcggaatagaagcataataaaccataggttcttcaataaataccaatgacagattatctagccgacccatattagagaaagcg 2289600  T
Q  150 agtcaggaatcattattaccaattctcc-aatgttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaacttt 248  Q
    || |  ||||||||||||||||||| || ||||||||| |||| ||||||||| ||||| |||||||||||||||||||||  |||||||||||||||||    
T  2289601 agccgagaatcattattaccaattccccgaatgttccataaaaagatattcatttaaacggtggaagaggaccctgagagcatgttttatatgaaacttt 2289700  T
Q  249 ttgcatannnnnnnnnatgagacttggaaacaacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtcttt 348  Q
    |||||||          | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  2289701 ttgcatattctttatttttagacttggaaacaacctctgtaaatggtacctcggttgctgctgcctttgatagccaagtgttcataaaatctaagtcttt 2289800  T
Q  349 ttgtagcaccggatctatcttagaacccttcagaaccacaatactactgatatcaagagttttattttttacggcagataaattagatatagtatttccc 448  Q
    ||||||||||||||||||||||||||| |   || ||||||||||||||||||||||||||||||||||||||  |||||||  |||||||||||||||     
T  2289801 ttgtagcaccggatctatcttagaaccatctggagccacaatactactgatatcaagagttttattttttacgagagataaaacagatatagtatttcca 2289900  T
Q  449 tcaagatt---tgcaactatatcatcggaaacattctcaagctgcatactaaaagtattattctgaataacaggattatgagaagtatgagttaccacag 545  Q
    || |||||   |||||||||||||||| ||||||||||||||||||| |||||| ||| |||||||||||||||| ||||||||  |||||||||||||     
T  2289901 tccagattatgtgcaactatatcatcgaaaacattctcaagctgcatgctaaaattatgattctgaataacaggactatgagaaaaatgagttaccacaa 2290000  T
Q  546 gtgacggaattccttccggagtgtctgtgc 575  Q
    |||| ||||||||| ||||||||| |||||    
T  2290001 gtgatggaattcctcccggagtgtttgtgc 2290030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 183 - 575
Target Start/End: Original strand, 20304077 - 20304478
Alignment:
Q  183 tccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgcatannnnnnnnnatg---------agactt 273  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||          ||         ||||||    
T  20304077 tccaaaacatgatattcatttaaacggtggaagaggaccctgagagcgggttttatatgaaactttttgcatatttttttttttgttttttctgagactt 20304176  T
Q  274 ggaaacaacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaa 373  Q
    ||||||||| | |||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20304177 ggaaacaacttgtgtaaatggtacctcggtagctgctggctttgatagccaagtgtgcataaaatctaagtctttttgtagcaccagatctatcttagaa 20304276  T
Q  374 cccttcagaaccacaatactactgatatcaagagttttattttttacggcagataaattagatatagtatttccctcaag---atttgcaactatatcat 470  Q
    ||||   || ||||||||||||||||||||||||||||||||||||||| |||||||  | ||||||||||||||||| |   ||| |||||||||||||    
T  20304277 ccctcgggagccacaatactactgatatcaagagttttattttttacgggagataaaacatatatagtatttccctcaggattattagcaactatatcat 20304376  T
Q  471 cggaaacattctcaagctgcatactaaaagtattattctgaataacaggattatgagaagtatgagttaccacaggtgacggaattccttccggagtgtc 570  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |   |||||||||||||||||||||||||||||||||| ||||||||||    
T  20304377 cggaaacattctcaagctgcatactaaaattattattctgaataacaggact---agaagtatgagttaccacaggtgacggaattcctcccggagtgtc 20304473  T
Q  571 tgtgc 575  Q
    |||||    
T  20304474 tgtgc 20304478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 180 - 408
Target Start/End: Complemental strand, 15409134 - 15408904
Alignment:
Q  180 tgttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgcatannnnnnnnnat--gagacttggaa 277  Q
    |||||||||| ||||||||||| || || ||||||||||||| ||||||||||||||||||| || ||||||||||          |  |||||||||||    
T  15409134 tgttccaaaagatgatattcatttagacggtggaagaggaccttgagagcgggttttatatggaattttttgcatatttttcttcttctgagacttggaa 15409035  T
Q  278 acaacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaaccct 377  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15409034 acaacctctataaatggtacctcggttgctgctgcctttgatagccaagtgtgcatgaaatctaagtctttttgtagcaccggatctatcttagaaccct 15408935  T
Q  378 tcagaaccacaatactactgatatcaagagt 408  Q
     | || ||||||| |||||||||||||||||    
T  15408934 ccggagccacaatgctactgatatcaagagt 15408904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 20304022 - 20304084
Alignment:
Q  1 gcccacatttcaggaatcagaggctccctattattcttagtaacacatacatttatccaaaac 63  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||  ||||||||    
T  20304022 gcccacatgtcaggaatgagaggctccctattattcttagtaacacatacattcctccaaaac 20304084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 3570223 - 3570304
Alignment:
Q  155 ggaatcattattaccaattctcc-aatgttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttt 235  Q
    |||||||||||||||||| | || ||  ||||||||||| |||||||| ||||| | |||||||| || |||||||||||||    
T  3570223 ggaatcattattaccaatcccccgaactttccaaaaaataatattcatttaaacggaggaagaggtccttgagagcgggttt 3570304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 41760648 - 41760719
Alignment:
Q  182 ttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgca 253  Q
    |||||| |||| |||||||| ||||| ||||  | |||||||||||||||||||| |||| ||| |||||||    
T  41760648 ttccaataaataatattcatttaaacggtgggcggggaccctgagagcgggttttgtatgcaaccttttgca 41760719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 51464881 - 51464939
Alignment:
Q  195 tattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgca 253  Q
    ||||||| ||||| | ||||||||||||||||||| |||||| |||||| | |||||||    
T  51464881 tattcatttaaacggaggaagaggaccctgagagctggttttgtatgaagccttttgca 51464939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 183 - 575
Target Start/End: Original strand, 37634812 - 37635206
Alignment:
Q  183 tccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgcatannnnnnnnnat--gagacttggaaaca 280  Q
    ||||||| ||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||          |  ||||||||||||||    
T  37634812 tccaaaacatgatattcatttaaacggtggaagaggaccatgagagcgggttttatatgaaactttttgcatattcttttttttctgagacttggaaaca 37634911  T
Q  281 acctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaacccttca 380  Q
    |||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       
T  37634912 acctgtgtaaatggtacctcggtagctgctgcctttgatagccaagtgtgcataaaatccaagtctttttgtagcaccggatctatcttagaaccctcgg 37635011  T
Q  381 gaaccacaatactactgatatcaagagttttattttttacggcagataaattagatatagtatttccctcaag---atttgcaactatatcatcggaaac 477  Q
    || ||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||   ||| ||||||||||||||||||||    
T  37635012 gagccacaatactactgatatcaagagttttattttttacgggagataaaacagatatagtatttccctcaagattattagcaactatatcatcggaaac 37635111  T
Q  478 attctcaagctgcatactaaaagtattattctgaataacaggattatgagaagtatgagttaccacaggtgacggaattccttccggagtgtctgtgc 575  Q
    |||||||||||||||||||||| ||||||| | ||||||| || |   |||||||||||||||||||||||||| ||||||| || ||||||||||||    
T  37635112 attctcaagctgcatactaaaattattattttaaataacatgact---agaagtatgagttaccacaggtgacgaaattcctcccagagtgtctgtgc 37635206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 253
Target Start/End: Complemental strand, 25802823 - 25802765
Alignment:
Q  195 tattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgca 253  Q
    ||||||| ||||| | |||||||||||||||||||||||||| |||||| | |||||||    
T  25802823 tattcatttaaacggaggaagaggaccctgagagcgggttttgtatgaagccttttgca 25802765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 542
Target Start/End: Original strand, 21345766 - 21345846
Alignment:
Q  462 ctatatcatcggaaacattctcaagctgcatactaaaagtattattctgaataacaggattatgagaagtatgagttacca 542  Q
    |||| ||||| || ||||||||||| || || ||||||||||||||   |||| ||||  |||||||| ||||||||||||    
T  21345766 ctatctcatcagatacattctcaagttgaatgctaaaagtattattagtaatagcagggctatgagaaatatgagttacca 21345846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0741 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0741
Description:

Target: scaffold0741; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 183 - 571
Target Start/End: Complemental strand, 6383 - 5989
Alignment:
Q  183 tccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgcatannnnnnnnnat----gagacttggaaa 278  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||          |    ||||||||||||    
T  6383 tccaaaacatgatattcatttaaacggtggaagaggaccctgagagcgggttttatatgaaactttttgcatattcttttttttttctgagacttggaaa 6284  T
Q  279 caacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaaccctt 378  Q
    |||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||     
T  6283 caacctgtgtaaatggtacctcggtagctgctgcctttgatagccaagtgtgcataaaatccaagtctttttgtagcaccgaatctatcttagaaccctc 6184  T
Q  379 cagaaccacaatactactgatatcaagagttttatttttta-cggcagataaattagatatagtatttccctcaagattt----gcaactatatcatcgg 473  Q
      || ||||||||||| ||||||||||||||||||||||||  || |||||||  |||||||||||||||||||||||||    ||||||||||||||||    
T  6183 gggagccacaatactattgatatcaagagttttattttttatggggagataaaacagatatagtatttccctcaagatttattagcaactatatcatcgg 6084  T
Q  474 aaacattctcaagctgcatactaaaagtattattctgaataacaggattatgagaagtatgagttaccacaggtgacggaattccttccggagtgtct 571  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||||| ||||||| || ||||||||    
T  6083 aaacattctcaagctgcatactaaaagtattattctgaataacaggact---agaagtatgagttaccacaggtgacgaaattcctcccagagtgtct 5989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 179 - 569
Target Start/End: Complemental strand, 25820481 - 25820086
Alignment:
Q  179 atgttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgcatannnnnnnnnat--gagacttgga 276  Q
    |||||||||||||| |||||||| ||||| |||||||||||||||||||||| ||||| |||| |||||||||||||          |  ||||||| ||    
T  25820481 atgttccaaaaaattatattcatttaaacggtggaagaggaccctgagagcgagttttgtatggaactttttgcatattcttatttttccgagactttga 25820382  T
Q  277 aacaacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaaccc 376  Q
     ||||||||||||||||||||||||||||||||||| || ||| ||||| || |||||||||| |||||||||||||||||||||||| ||| |||||||    
T  25820381 cacaacctctgtaaatggtacctcggttgctgctgctttagatagccaattgcgcataaaatccaagtctttttgtagcaccggatctgtctgagaaccc 25820282  T
Q  377 ttcagaaccacaatactactgatatcaagagttttattttttacggcagataaattagatatagtatttccctcaa---gatttgcaactatatcatcgg 473  Q
    | |  | ||||||| |||||||||||||||||||||||||| || | |||||||  |   ||||| ||||||||||    |||||||| |||||| || |    
T  25820281 tccgaagccacaatgctactgatatcaagagttttatttttcacaggagataaaacaacgatagtgtttccctcaatattatttgcaattatatcgtctg 25820182  T
Q  474 aaacattctcaagctgcatactaaaagtattattctgaataacaggattatgagaagtatgagttaccacaggtgacggaattccttccggagtgt 569  Q
    |||| |||||||| |||||||||||||| | ||| ||||||||||||  ||||||||  |||||||||| |||||||||||||||| |||| ||||    
T  25820181 aaactttctcaagatgcatactaaaagtgtgattatgaataacaggacgatgagaagagtgagttaccataggtgacggaattcctcccggggtgt 25820086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 33858666 - 33858737
Alignment:
Q  182 ttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgca 253  Q
    |||||| |||| |||||||| ||||| ||||  | |||||||||||||||||||| |||| ||| |||||||    
T  33858666 ttccaataaataatattcatttaaacggtgggcggggaccctgagagcgggttttgtatgcaaccttttgca 33858737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 3e-71; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 180 - 408
Target Start/End: Complemental strand, 25823302 - 25823072
Alignment:
Q  180 tgttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgcatannnnnnnnnat--gagacttggaa 277  Q
    |||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||||| || ||||||||||          |  |||||||||||    
T  25823302 tgttccaaaagatgatattcatttagacggtggaagaggaccctgagagcgggttttatatggaattttttgcatatttttcttcttctgagacttggaa 25823203  T
Q  278 acaacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaaccct 377  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25823202 acaacctctataaatggtacctcggttgctgctgcctttgatagccaagtgtgcatgaaatctaagtctttttgtagcaccggatctatcttagaaccct 25823103  T
Q  378 tcagaaccacaatactactgatatcaagagt 408  Q
     | || ||||||| |||||||||||||||||    
T  25823102 ccggagccacaatgctactgatatcaagagt 25823072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 180 - 408
Target Start/End: Complemental strand, 16170996 - 16170767
Alignment:
Q  180 tgttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgcatannnnnnnnnat--gagacttggaa 277  Q
    |||||||||| ||||||||||| || || ||||||||||||| ||||||||||||||||||| || ||||||||||          |  ||||||| |||    
T  16170996 tgttccaaaagatgatattcatttagacggtggaagaggacc-tgagagcgggttttatatggaattttttgcatatttttcttcttctgagacttagaa 16170898  T
Q  278 acaacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaaccct 377  Q
    | ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  16170897 ataacctctataaatggtacctcggttgctgctgcctttgatagccaagtgtgcatgaaatctaagtctttttgtaacaccggatctatcttagaaccct 16170798  T
Q  378 tcagaaccacaatactactgatatcaagagt 408  Q
    || || |||||||||||||||||||| ||||    
T  16170797 tcggagccacaatactactgatatcaggagt 16170767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 21273225 - 21273124
Alignment:
Q  155 ggaatcattattaccaattctcca-atgttccaaaaaatga--tattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttg 251  Q
    |||||||||||||||||| | ||  |||||||||||||  |  ||||||| ||||| | |||||||||||||||||||||||||| |||||| | |||||    
T  21273225 ggaatcattattaccaatcccccggatgttccaaaaaaaaaaatattcatttaaacggaggaagaggaccctgagagcgggttttgtatgaagccttttg 21273126  T
Q  252 ca 253  Q
    ||    
T  21273125 ca 21273124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 365
Target Start/End: Original strand, 23667397 - 23667496
Alignment:
Q  266 tgagacttggaaacaacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatcta 365  Q
    |||||||||||||| |||||| ||||||| |||||  |  | || ||||||| | ||||||| |||||||||||||| ||||| || | |||||| ||||    
T  23667397 tgagacttggaaactacctctttaaatggcacctcattcacagcagcctttgctagccaagtttgcataaaatctaattctttctgcaacaccgggtcta 23667496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 2e-60; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 119 - 408
Target Start/End: Complemental strand, 21862349 - 21862057
Alignment:
Q  119 attatgtagccgacaccaatcagagaaagcaagtcaggaatcattattaccaat-tctccaatgttccaaaaaatgatattcatataaaccgtggaagag 217  Q
    |||| |||||||||||  ||||||||||||||||| | ||||| |||||||||| || |   |||||||||| ||||||||||| ||||  |||||||||    
T  21862349 attacgtagccgacacatatcagagaaagcaagtcggtaatcaatattaccaatgtcccgggtgttccaaaagatgatattcatttaaatggtggaagag 21862250  T
Q  218 gaccctgagagcgggttttatatgaaactttttgcatannnnnnnnnat--gagacttggaaacaacctctgtaaatggtacctcggttgctgctgcctt 315  Q
    |||||||||||||||||||||||| ||| |||| || |          |  ||||||||||||||| |||| ||||||||||||||| |||| || ||||    
T  21862249 gaccctgagagcgggttttatatggaacattttccacatttttcttcttctgagacttggaaacaatctctataaatggtacctcggatgctcctacctt 21862150  T
Q  316 tgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaacccttcagaaccacaatactactgatatcaagagt 408  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || |||||||  |||||||||| |||||    
T  21862149 tgatagccaagtgtgcatgaaatctaagtctttttgtagcaccggatctatcttagaaccctccggagccacaatgttactgatatctagagt 21862057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 467 - 556
Target Start/End: Complemental strand, 15042420 - 15042331
Alignment:
Q  467 tcatcggaaacattctcaagctgcatactaaaagtattattctgaataacaggattatgagaagtatgagttaccacaggtgacggaatt 556  Q
    |||||||||||||||||||| |||||  |||| ||||||||   |||||||||| |||||||||||| ||||||||| |||| |||||||    
T  15042420 tcatcggaaacattctcaagttgcattgtaaatgtattattaataataacaggagtatgagaagtatcagttaccaccggtgtcggaatt 15042331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 22834162 - 22834223
Alignment:
Q  182 ttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaa 243  Q
    ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| ||||||    
T  22834162 ttccaaaaaataatattcatttaaacagtggaagaggaccctgagagcgggttttttatgaa 22834223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 544
Target Start/End: Complemental strand, 29807170 - 29807102
Alignment:
Q  476 acattctcaagctgcatactaaaagtattattctgaataacaggattatgagaagtatgagttaccaca 544  Q
    ||||||||||| |||||||||||||||||||| | | ||||| || | |||||||||||||||||||||    
T  29807170 acattctcaagttgcatactaaaagtattattattattaacaagactgtgagaagtatgagttaccaca 29807102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 18857093 - 18857023
Alignment:
Q  183 tccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgca 253  Q
    |||||||| | |||||||| ||||| | ||||||||||| |||||||||||||| |||||| | |||||||    
T  18857093 tccaaaaactaatattcatttaaacggaggaagaggaccttgagagcgggttttgtatgaagccttttgca 18857023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 365
Target Start/End: Original strand, 22834252 - 22834348
Alignment:
Q  269 gacttggaaacaacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatcta 365  Q
    ||||| ||||| |||||| ||||||| |||||  |  | || ||||||| | ||||||| ||||||||||||||||| || || |||||||||||||    
T  22834252 gactttgaaactacctctttaaatggcacctcattcacagcagcctttgctagccaagtttgcataaaatctaagtccttctgcagcaccggatcta 22834348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 368
Target Start/End: Complemental strand, 29807320 - 29807281
Alignment:
Q  329 tgcataaaatctaagtctttttgtagcaccggatctatct 368  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  29807320 tgcataaaatctaagtccttctgtagcaccggatctatct 29807281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 29807512 - 29807433
Alignment:
Q  143 gaaagcaagtcaggaatcattattaccaattctcc-aatgttccaaaaaatgatattcatataaaccgtggaagaggacc 221  Q
    ||||||||| | |||||||||||||||||| ||||  ||||||||| |||| ||||| || ||| | |||||||||||||    
T  29807512 gaaagcaagacgggaatcattattaccaatcctccggatgttccaataaataatatttatttaagcggtggaagaggacc 29807433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 137 - 330
Target Start/End: Complemental strand, 46137213 - 46137016
Alignment:
Q  137 atcagagaaagcaagtcaggaatcattattaccaattctcca-atgttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttt 235  Q
    ||||||||||||||||| ||||||| |||||||||||| ||  |||||||||||||| |||||||| ||||| ||||||||||||| |||||||||||||    
T  46137213 atcagagaaagcaagtcgggaatcaatattaccaattccccggatgttccaaaaaataatattcatttaaacggtggaagaggaccttgagagcgggttt 46137114  T
Q  236 tatatgaa---actttttgcatannnnnnnnnatgagacttggaaacaacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtg 330  Q
    ||||||||     |||||   |           ||||||||||||||||||||| |||||| ||||||||||||||||| ||||||| ||||||||||    
T  46137113 tatatgaatagcatttttttttttttcttcttctgagacttggaaacaacctctataaatgatacctcggttgctgctgtctttgatagccaagtgtg 46137016  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 15199597 - 15199656
Alignment:
Q  182 ttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatg 241  Q
    ||||||||||| |||| ||| ||||| |||||||||||||||||||||||||||| ||||    
T  15199597 ttccaaaaaataatatacatttaaacggtggaagaggaccctgagagcgggttttgtatg 15199656  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 36776872 - 36776948
Alignment:
Q  155 ggaatcattattaccaattctcc-aatgttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcg 230  Q
    |||| ||||||||||||| | || ||||||||||||||| ||||| || ||||| | ||||||||||||||||||||    
T  36776872 ggaaccattattaccaatcccccgaatgttccaaaaaataatatttatttaaacagaggaagaggaccctgagagcg 36776948  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 9133247 - 9133345
Alignment:
Q  157 aatcattattaccaattctcca-atgttccaaaaaatg-atattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgca 253  Q
    |||||||||||||||| | ||  |||||||||||||   |||||||| ||||| | ||||||||||| |||||||||||||| |||||| | |||||||    
T  9133247 aatcattattaccaatcccccggatgttccaaaaaaaatatattcatttaaacggaggaagaggaccttgagagcgggttttgtatgaagccttttgca 9133345  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 159161 - 159220
Alignment:
Q  194 atattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgca 253  Q
    |||||||| ||||| | |||||||||||||||||||||||||| || ||| | |||||||    
T  159161 atattcatttaaacggaggaagaggaccctgagagcgggttttgtaagaacccttttgca 159220  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 15218684 - 15218739
Alignment:
Q  181 gttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggtttt 236  Q
    |||| ||||||| |||||||| ||||| |||||||||||||||||||  |||||||    
T  15218684 gttctaaaaaataatattcatttaaacggtggaagaggaccctgagaatgggtttt 15218739  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 365
Target Start/End: Original strand, 159281 - 159335
Alignment:
Q  311 gcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatcta 365  Q
    ||||||| | ||||||| |||||||||||||||||||| || |||||||| ||||    
T  159281 gcctttgctagccaagtttgcataaaatctaagtctttctgcagcaccgggtcta 159335  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 540
Target Start/End: Original strand, 15218954 - 15219034
Alignment:
Q  460 aactatatcatcggaaacattctcaagctgcatactaaaagtattattctgaataacaggattatgagaagtatgagttac 540  Q
    |||||| ||||| || ||||||||||| || || |||||||||||||  | |||| ||||| |||||||| || |||||||    
T  15218954 aactatgtcatcagatacattctcaagttgtatgctaaaagtattatcattaatagcaggactatgagaaataggagttac 15219034  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 1656588 - 1656499
Alignment:
Q  155 ggaatcattattaccaattctcc-aatgttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaa 243  Q
    |||||||||||||||||| | || ||||||  ||||||| |||||||| ||||   | ||||||| ||||||||||||||||||||||||    
T  1656588 ggaatcattattaccaatcccccgaatgtttaaaaaaataatattcatttaaagaatagaagaggtccctgagagcgggttttatatgaa 1656499  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 365
Target Start/End: Complemental strand, 21278961 - 21278862
Alignment:
Q  266 tgagacttggaaacaacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatcta 365  Q
    |||||||| ||||| |||||| ||||||| |||||  |  | ||  |||||| | ||||||| |||||||||||||||||||| || |||||||| ||||    
T  21278961 tgagactttgaaactacctctttaaatggcacctcattcacagcatcctttgctagccaagtttgcataaaatctaagtctttctgcagcaccgggtcta 21278862  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 31924404 - 31924333
Alignment:
Q  182 ttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgca 253  Q
    |||||| |||| |||||||| ||||| ||||  | |||||||||||||||||||| |||| ||| |||||||    
T  31924404 ttccaataaataatattcatttaaacggtgggcggggaccctgagagcgggttttgtatgcaaccttttgca 31924333  T

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Target: scaffold0073 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 40606 - 40706
Alignment:
Q  155 ggaatcattattaccaattctcc-aatgttccaaaaaatgat-attcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgc 252  Q
    |||||||||||||||||| | || ||| |||||||| |  || |||||| |||||   |||||||||||||||||||||||||| |||||| | ||||||    
T  40606 ggaatcattattaccaatcccccgaatcttccaaaacaaaattattcatttaaacgaaggaagaggaccctgagagcgggttttgtatgaagccttttgc 40705  T
Q  253 a 253  Q
    |    
T  40706 a 40706  T

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Target: scaffold0044 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 543
Target Start/End: Complemental strand, 61041 - 60965
Alignment:
Q  467 tcatcggaaacattctcaagctgcatactaaaagtattattctgaataacaggattatgagaagtatgagttaccac 543  Q
    |||||||| ||||||||||| ||||| ||||| ||||||||   ||||| |||| |||||||||||  |||||||||    
T  61041 tcatcggacacattctcaagttgcatgctaaatgtattattaataataaaaggagtatgagaagtagcagttaccac 60965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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