View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18566_high_11 (Length: 263)
Name: NF18566_high_11
Description: NF18566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18566_high_11 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 7423146 - 7422897
Alignment:
| Q |
1 |
caatgttgatggttatgatatcccaaaagggactctaattcttgtcaatacttggacaattggaagagatcctaatgtttgggacaatccatatgagttt |
100 |
Q |
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| T |
7423146 |
caatgttgatggttatgatatcccaaaagggactctaattcttgtcaatacttggacaattggaagagatcctaatgtttgggacaatccatatgagttt |
7423047 |
T |
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| Q |
101 |
ataccagagaggtttattggtaataatatagatgtaaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctc |
200 |
Q |
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| T |
7423046 |
atacctgagaggtttattggtaataatatagatgtaaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctc |
7422947 |
T |
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| Q |
201 |
ttggtcttaaggtgatacaatcaagtttggctaatttgttgcatggattt |
250 |
Q |
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| T |
7422946 |
ttggtcttaaggtgatacaatcaagtttggctaatttgttgcatggattt |
7422897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 7429555 - 7429303
Alignment:
| Q |
1 |
caatgttgatggttatgatatcccaaaagggactctaattcttgtcaatacttggacaattggaagagatcctaatgtttgggacaatccatatgagttt |
100 |
Q |
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| T |
7429555 |
caatgttgatggttatgatataccaaaagggactatgattcttgtcaatacttggacaattggaagagattctgatagttgggataatccatatgaattt |
7429456 |
T |
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| Q |
101 |
ataccagagaggtttattggtaataatatagatgtaa---aaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatc |
197 |
Q |
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| T |
7429455 |
ataccagagaggtttattaacaatgatatagatataataaaaggacatgattataagatgttgccattaggtgctggtagaaggatgtgtcctggttatc |
7429356 |
T |
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| Q |
198 |
ctcttggtcttaaggtgatacaatcaagtttggctaatttgttgcatggattt |
250 |
Q |
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| T |
7429355 |
ctcttggtcttaaggtggttcaatcaagtttggctaacttgttgcatggattt |
7429303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 7415483 - 7415238
Alignment:
| Q |
5 |
gttgatggttatgatatcccaaaagggactctaattcttgtcaatacttggacaattggaagagatcctaatgtttgggacaatccatatgagtttatac |
104 |
Q |
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| T |
7415483 |
gttgatggttacgatattcccaaagggactatagttcttgtcaatacttggacaattgcaagagattctgaggtttgggagaatccatatgaatttatgc |
7415384 |
T |
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| Q |
105 |
cagagaggtttattggtaataatatagatgtaaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctcttgg |
204 |
Q |
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| T |
7415383 |
ctgagaggtttcttggtaaagatatagatgtaaaaggacatgattttgagttgttaccatttggtgctggtagaaggatgtgtcctggttaccctcttgg |
7415284 |
T |
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| Q |
205 |
tcttaaggtgatacaatcaagtttggctaatttgttgcatggattt |
250 |
Q |
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| T |
7415283 |
tattaaggtgattcaaacaagtttggctaatttgttgcatggattt |
7415238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 19799 - 19836
Alignment:
| Q |
80 |
tgggacaatccatatgagtttataccagagaggtttat |
117 |
Q |
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| T |
19799 |
tgggagaatccatatgagtttaaaccagagaggtttat |
19836 |
T |
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