View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18566_high_12 (Length: 262)
Name: NF18566_high_12
Description: NF18566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18566_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 8185780 - 8186015
Alignment:
| Q |
8 |
gtcgaagaatattatgaacaatacgcatggccgatttattgtcacaaaacagcttcagaacattgtattttcaaatcttctagctgaagtttcatccata |
107 |
Q |
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| T |
8185780 |
gtcgaacaagattatgaacaatactcatggccgatttattgtcacaaaacagcttcagaacattgtattttcaaatcttctagctgaagtttcatccata |
8185879 |
T |
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| Q |
108 |
agtggttaattacattaatttcttgtacttgtatcaaaagcatattaaacatatttttagcttacttgttcatgaattacctgaatttcaactttccaag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8185880 |
agtggttaattacattaatttcttgtacttgtatcaaaagcatattaaacatatttttagcttacttgttcatgaattacctgaatttcaactttccaag |
8185979 |
T |
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| Q |
208 |
ctaatcgattctatatgttatgttgaggagactatg |
243 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
8185980 |
ctaattgattctatatgttatgttgaggagactatg |
8186015 |
T |
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