View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18566_high_15 (Length: 248)
Name: NF18566_high_15
Description: NF18566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18566_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 4791656 - 4791415
Alignment:
| Q |
1 |
cacaattaagatcgatccattcactcacatggcttagtctcttcaaacttcaaactccaaactccaaattcatcttcaatttctttgaaactttcttcaa |
100 |
Q |
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| T |
4791656 |
cacaattaagatcgatccattcactcacatggcttagtctcttcaaacttcaaactccaaactccaaattcatcttcaatttctttgaaactttcttcaa |
4791557 |
T |
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| Q |
101 |
accctaaccctaattcgcgtagatctcaaattagggttatatggaaatggcgtcaagtcctcgcaccgttgaagagatcttcaaagatttcagttctcgt |
200 |
Q |
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| T |
4791556 |
accctaaccctaattcgcgtagatctcaaattagggttatatggaaatggcgtcaagtcctcgcaccgttgaagagatcttcaaagatttcagttctcgt |
4791457 |
T |
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| Q |
201 |
agagatggtatcgttcgtgctttaactcaaggtatattcttc |
242 |
Q |
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| T |
4791456 |
agagatggtatcgttcgtgctttaactcaaggtatattcttc |
4791415 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 25140166 - 25140229
Alignment:
| Q |
140 |
tatggaaatggcgtcaagtcctcgcaccgttgaagagatcttcaaagatttcagttctcgtaga |
203 |
Q |
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| T |
25140166 |
tatggaaatggcttctagccctcgtaccgttgaagagatcttcaaagattacagcgctcgtaga |
25140229 |
T |
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