View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18566_high_6 (Length: 374)
Name: NF18566_high_6
Description: NF18566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18566_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 24554937 - 24555297
Alignment:
| Q |
1 |
gtaactggtttaccagttaaattcaccatacttgaaaacagcactagtaatatcgttaccggtaccgatcttgagatcgagttcactaagaagcctgatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| |||| |
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| T |
24554937 |
gtaactggtttaccagttaaattcaccatactagaaaacagcactagtaacatcgttaccggtaccgatcttgagatcgagttcattaacaagccagatt |
24555036 |
T |
|
| Q |
101 |
gtgctgaatcttccaaatggttgatggttgttgatcatgtcactcaactaagttttgttggtattggtggtcctgcaaactatcctggtgtagaattaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24555037 |
gtgctgaatcttccaaatggttgatggttgttgatcatgtcactcaactaagttttgttggtattggtggtcctgcaaactatcctggtgtagaattaat |
24555136 |
T |
|
| Q |
201 |
tagtggaaaatttttaattttgaaacatggatctggtaatgcttatagggttggattttgtttggatacaacaggtgattgtgcttatcttggattacaa |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24555137 |
tagtggaaaatttttaattttgaaacatggatctggtaatgcttatagggttggattttgtttggatacaacaggtgattgtgcttatcttggattacaa |
24555236 |
T |
|
| Q |
301 |
gagtttaattctggtgaaggtggatcacgtttgattttgactgcaattgatgcttattctg |
361 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24555237 |
gagtttaattctggtgaaggtggatcacgtttgattttgactgcaattaatgcttattctg |
24555297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 2930552 - 2930906
Alignment:
| Q |
7 |
ggtttaccagttaaattcaccatacttgaaaacagcactagtaatatcgttaccggtaccgatcttgagatcgagttcactaagaagcctgattgtgctg |
106 |
Q |
| |
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||||||||||||||||||||||| | |||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
2930552 |
ggtttaccagttaaattcaccatcccagaaaacagcactggtaatatcttgaccggtaccgatcttgagatcgagttcactaaaaaggctgattgtgctg |
2930651 |
T |
|
| Q |
107 |
aatcttccaaatggttgatggttgttgatcatgtcactcaactaagttttgttggtattggtggtcctgcaaactatcctggtgtagaattaattagtgg |
206 |
Q |
| |
|
|| | || |||||||||||| ||||||||||| ||||||||||||| |||||||||||||||| | ||||||||| |||| ||||| ||| ||||| |
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|
| T |
2930652 |
aagcatcaaaatggttgatgtttgttgatcataatactcaactaagttgtgttggtattggtggtgcaacaaactatcatggtatagaaacaataagtgg |
2930751 |
T |
|
| Q |
207 |
aaaatttttaattttgaaacatggatctggtaatgcttatagggttggattttgtttggatacaacaggtgattgtgcttatcttggattacaagagttt |
306 |
Q |
| |
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||||| ||||| ||||||||||||||||| ||| ||||||| ||||||||||||||||| ||| || |||||| ||| ||||| | ||| ||| |
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| T |
2930752 |
caaattcttaatagtgaaacatggatctggtcatgtttataggcttggattttgtttggatgtaactggaaattgtggctatattggacttcaaatgttc |
2930851 |
T |
|
| Q |
307 |
aattctggtgaaggtggatcacgtttgattttgactgcaattgatgcttattctg |
361 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||| |||||||| |
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|
| T |
2930852 |
aattctgaagaaggtggatcacgtttgtttttgactgcaattgatgtttattctg |
2930906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 2916964 - 2917318
Alignment:
| Q |
7 |
ggtttaccagttaaattcaccatacttgaaaacagcactagtaatatcgttaccggtaccgatcttgagatcgagttcactaagaagcctgattgtgctg |
106 |
Q |
| |
|
||||||||||||||||||||| | | ||||||| ||| |||||||| | || ||||||||||||||||| ||||| |||||||||||||||||||||| |
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|
| T |
2916964 |
ggtttaccagttaaattcaccgtcccagaaaacaacaccggtaatatcttgactggtaccgatcttgagattgagtttactaagaagcctgattgtgctg |
2917063 |
T |
|
| Q |
107 |
aatcttccaaatggttgatggttgttgatcatgtcactcaactaagttttgttggtattggtggtcctgcaaactatcctggtgtagaattaattagtgg |
206 |
Q |
| |
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|||| || |||||||||||| || |||||||| ||||||||||||| |||||||||||||||| | ||||||||| |||| ||||| ||| ||||| |
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|
| T |
2917064 |
aatcatcaaaatggttgatgtttcttgatcataatactcaactaagttgtgttggtattggtggtgcaacaaactatcatggtatagaaacaataagtgg |
2917163 |
T |
|
| Q |
207 |
aaaatttttaattttgaaacatggatctggtaatgcttatagggttggattttgtttggatacaacaggtgattgtgcttatcttggattacaagagttt |
306 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||| ||||||| ||||||||||||||||| ||| |||||||||| |||| ||||| | ||| ||| |
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|
| T |
2917164 |
caaattcttaatagtgaaacatggatctggtcatgtttataggcttggattttgtttggatgtaactggtgattgtggttatattggacttcaaatgttc |
2917263 |
T |
|
| Q |
307 |
aattctggtgaaggtggatcacgtttgattttgactgcaattgatgcttattctg |
361 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
2917264 |
aattctgaagaaggtggatcacgtttgtttttgactgcagttgatgcttattctg |
2917318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 24566646 - 24567006
Alignment:
| Q |
7 |
ggtttaccagttaaattcaccatacttgaaaacagcactagtaatatcgttaccggtaccgatcttgagatcgagttcactaagaagcctgattgtgctg |
106 |
Q |
| |
|
||||||||||||||||||| ||| | ||||| ||||||||||||||| | | ||||| ||||||||||| |||||||||| |||||||||||| ||| |
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|
| T |
24566646 |
ggtttaccagttaaattcagcatgttagaaaatagcactagtaatatcttgccaggtactgatcttgagattgagttcactacgaagcctgattgcgcta |
24566745 |
T |
|
| Q |
107 |
aatcttccaaatggttgatggttgttgatcatgtcactcaactaagttttgttggtattggtggtcctgcaaactatcctggtgtagaattaattagtgg |
206 |
Q |
| |
|
|||| || ||||||| |||| |||||||||||| |||||||||||||||||| |||||||||||| |||| ||| |||||||||||||| || ||||| |
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|
| T |
24566746 |
aatcgtcgaaatggtcgatgtttgttgatcatgacactcaactaagttttgtcggtattggtggttctgcgaacaatcctggtgtagaaacaaccagtgg |
24566845 |
T |
|
| Q |
207 |
aaaatttttaattttga------aacatggatctggtaatgcttatagggttggattttgtttggatacaacaggtgattgtgcttatcttggattacaa |
300 |
Q |
| |
|
|||||||||| | ||| |||||||||||||| ||||||||||| |||||||||||||||||||||| || ||||||| || | ||| ||| || |
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|
| T |
24566846 |
aaaatttttagtagtgaaacatcaacatggatctggtcatgcttataggattggattttgtttggatacaactggagattgtggttttattgcattggaa |
24566945 |
T |
|
| Q |
301 |
gagtttaattctggtgaaggtggatcacgtttgattttgactgcaattgatgcttattctg |
361 |
Q |
| |
|
|| ||||| | || |||||| ||||||||||||| |||| | |||||||||||||| |
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|
| T |
24566946 |
tttttcaattccgaagatggtggaccacgtttgatttttactgtgaatgatgcttattctg |
24567006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 189
Target Start/End: Original strand, 20475777 - 20475895
Alignment:
| Q |
71 |
ttgagatcgagttcactaagaagcctgattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactcaactaagttttgttggtattggtgg |
170 |
Q |
| |
|
|||| ||||||||||| ||||||||| |||| | |||||| || ||||||||||| |||||||| ||| | |||| | || ||||||||||||||| |
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|
| T |
20475777 |
ttgatatcgagttcacaaagaagcctaattgcgttgaatcatcaaaatggttgatatttgttgatagtgttattcaaaaagcttgtgttggtattggtgg |
20475876 |
T |
|
| Q |
171 |
tcctgcaaactatcctggt |
189 |
Q |
| |
|
||||| ||| ||||||||| |
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|
| T |
20475877 |
tcctgaaaattatcctggt |
20475895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 20505583 - 20505699
Alignment:
| Q |
73 |
gagatcgagttcactaagaagcctgattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactcaactaagttttgttggtattggtggtc |
172 |
Q |
| |
|
||||| |||||||| |||||||||||||||| |||||| || ||||||||||| || ||||| |||| | | | || || ||||||||||||||||| |
|
|
| T |
20505583 |
gagattgagttcacaaagaagcctgattgtgttgaatcatcaaaatggttgatatttattgataatgttattaatatattttgtgttggtattggtggtc |
20505682 |
T |
|
| Q |
173 |
ctgcaaactatcctggt |
189 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
20505683 |
gagaaaactatcctggt |
20505699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 20517691 - 20517723
Alignment:
| Q |
154 |
tttgttggtattggtggtcctgcaaactatcct |
186 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
20517691 |
tttgttggtattggtggtcctgaaaactatcct |
20517723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 71 - 189
Target Start/End: Complemental strand, 13072369 - 13072251
Alignment:
| Q |
71 |
ttgagatcgagttcactaagaagcctgattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactcaactaagttttgttggtattggtgg |
170 |
Q |
| |
|
|||| ||||||||| || |||||||||||||| ||||||||| ||||||||||| |||||||| |||| | |||| | || ||||||||||||||| |
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|
| T |
13072369 |
ttgatatcgagttcgttaggaagcctgattgtgttgaatcttcaaaatggttgatatttgttgataatgttattcaaaaatcttgtgttggtattggtgg |
13072270 |
T |
|
| Q |
171 |
tcctgcaaactatcctggt |
189 |
Q |
| |
|
||| | ||||||||||||| |
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|
| T |
13072269 |
tccagaaaactatcctggt |
13072251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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