View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18566_high_8 (Length: 339)
Name: NF18566_high_8
Description: NF18566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18566_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 4791799 - 4792128
Alignment:
| Q |
1 |
gatttgctatttagtt-acacctgacagccgtccgattttcatcgactaagattgttttattgtgcgaaatttgttgttcgaccaggattgtttcaactc |
99 |
Q |
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| T |
4791799 |
gatttgctatttagtttacatctgagagccgtccgattttcatcgactaagattgttttattgtgcgaaattggttgttcgaccaggattgtttgatctc |
4791898 |
T |
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| Q |
100 |
aaattaataaccgataatgagtattgtgtggatcactatcttgtgttgttaactttctacacattcacagattt--------ggtgaattgtatgatctc |
191 |
Q |
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| T |
4791899 |
aaattaataaccgataatgagtattgtgtggatcactatcttgtgttgttaactttctacacattcacacatttggtgtatcggtgaattgtttgatctc |
4791998 |
T |
|
| Q |
192 |
aatccaacaaccatggatgaaacgaatgcatgaataaatcaaaaatttgacaacaggaaatctcatttcgcattgcgtgaagtagtatttttcatattag |
291 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4791999 |
aattcaacaaccatggatgaaacgaatgcatgaataaatcaaaaatttgaca--aggaaatctcatttcgcattgcgtgaagtagtatttttcatattag |
4792096 |
T |
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| Q |
292 |
aggagatctagatccatctttagggtctattt |
323 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4792097 |
aggagatctagatccatctttagggtctattt |
4792128 |
T |
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