View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18566_high_9 (Length: 322)

Name: NF18566_high_9

Description: NF18566

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18566_high_9

[»] chr7 (1 HSPs)

Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 220; E-Value: 1e-121

Query Start/End: Original strand, 9 - 306

Target Start/End: Original strand, 29952630 - 29952928

Alignment:

Q	9	caagaatatacacaaaaatgtcctgaaataatgggaaaaagaaaaaggtaacaaaagattccaggatttaccagaacaaaaagtgaactctgaacaaaat	108	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29952630	caagaatgtacacaaaaatgtcctgaaataatgggaaaatgaaaaaggtaagaaaagattccaggatttaccagaacaaaaagtgaactctgaacaaaat	29952729	T

Q	109	tattgttcattgtttacggaagtgaatctctatannnnnnnnnaaaagagtgctatatcatttatgtgtaattagaaagattaatccttcaaattggata	208	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29952730	tattgttcattgtttacggaagtgaatctctatatatattttttaaagagtactgtatcatttatgtgtaattagaaagattaatccttcaaattggata	29952829	T

Q	209	ggatcataacgaatcaggggcaaactc-ttcttcaaaatatttagaagatgtttcaatctgtcatgttttggctcagtggtggagtcagaaattttttg	306	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29952830	ggatcataacgaatcaggggcaaactctttcttcgaaatatttagaagatgtttcaatctgtcatactttggctcagtggcgaagtcagaaattttttg	29952928	T

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