View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18566_low_1 (Length: 753)

Name: NF18566_low_1
Description: NF18566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18566_low_1
NF18566_low_1
[»] chr4 (28 HSPs)
chr4 (320-634)||(34526016-34526327)
chr4 (1-292)||(34525723-34526013)
chr4 (574-749)||(42617160-42617335)
chr4 (574-741)||(4603262-4603429)
chr4 (574-749)||(46175909-46176084)
chr4 (577-642)||(897058-897123)
chr4 (558-627)||(3564309-3564378)
chr4 (574-658)||(18630825-18630909)
chr4 (558-634)||(28663668-28663744)
chr4 (575-749)||(15184527-15184701)
chr4 (552-634)||(48687030-48687111)
chr4 (578-627)||(25638363-25638412)
chr4 (574-642)||(11298670-11298738)
chr4 (558-658)||(48591338-48591438)
chr4 (548-643)||(12495548-12495643)
chr4 (574-749)||(23297418-23297591)
chr4 (560-658)||(48721892-48721990)
chr4 (549-634)||(488289-488374)
chr4 (574-634)||(9153512-9153572)
chr4 (575-639)||(22273871-22273935)
chr4 (574-741)||(47202814-47202981)
chr4 (576-627)||(38876054-38876105)
chr4 (695-749)||(35405665-35405719)
chr4 (574-632)||(41229001-41229059)
chr4 (574-659)||(2547977-2548062)
chr4 (553-658)||(17222901-17223006)
chr4 (708-749)||(19414109-19414150)
chr4 (558-607)||(30956807-30956856)
[»] chr1 (31 HSPs)
chr1 (558-753)||(26435089-26435284)
chr1 (574-749)||(32497202-32497377)
chr1 (574-749)||(15791364-15791539)
chr1 (574-749)||(17628355-17628530)
chr1 (551-630)||(47413472-47413551)
chr1 (552-658)||(37712139-37712245)
chr1 (574-744)||(9572714-9572886)
chr1 (577-658)||(13039019-13039100)
chr1 (574-634)||(19220269-19220329)
chr1 (558-749)||(28689982-28690176)
chr1 (575-749)||(5243335-5243509)
chr1 (548-627)||(26988251-26988330)
chr1 (558-723)||(37329326-37329492)
chr1 (558-723)||(48819305-48819471)
chr1 (558-627)||(35897533-35897602)
chr1 (577-658)||(36422914-36422995)
chr1 (578-642)||(4068203-4068267)
chr1 (574-642)||(46689480-46689548)
chr1 (574-742)||(51162256-51162425)
chr1 (574-622)||(28122726-28122774)
chr1 (558-642)||(49738215-49738299)
chr1 (574-660)||(41576325-41576411)
chr1 (708-749)||(391148-391189)
chr1 (578-627)||(4491314-4491363)
chr1 (577-642)||(9575416-9575481)
chr1 (577-642)||(12828212-12828277)
chr1 (575-660)||(19284968-19285053)
chr1 (574-639)||(22593337-22593402)
chr1 (693-749)||(29333397-29333454)
chr1 (693-741)||(37148142-37148191)
chr1 (693-741)||(37156967-37157016)
[»] chr8 (26 HSPs)
chr8 (575-749)||(12607060-12607234)
chr8 (574-749)||(42102087-42102262)
chr8 (578-749)||(38338785-38338956)
chr8 (560-658)||(34286480-34286578)
chr8 (574-749)||(32131420-32131596)
chr8 (574-749)||(37410843-37411018)
chr8 (574-634)||(41145326-41145386)
chr8 (551-658)||(16972263-16972370)
chr8 (574-723)||(28280715-28280865)
chr8 (550-639)||(10213786-10213875)
chr8 (574-634)||(32975783-32975843)
chr8 (457-534)||(2110862-2110938)
chr8 (583-749)||(42363256-42363422)
chr8 (558-632)||(28879153-28879227)
chr8 (574-659)||(38895730-38895815)
chr8 (575-627)||(9131059-9131111)
chr8 (558-642)||(24087259-24087343)
chr8 (562-658)||(24350437-24350533)
chr8 (558-643)||(15763177-15763260)
chr8 (688-749)||(19925432-19925494)
chr8 (578-644)||(25671824-25671890)
chr8 (576-634)||(32212947-32213005)
chr8 (708-749)||(19925537-19925578)
chr8 (578-639)||(25465781-25465842)
chr8 (685-749)||(30973969-30974034)
chr8 (685-749)||(43577201-43577266)
[»] chr5 (33 HSPs)
chr5 (578-749)||(5203368-5203539)
chr5 (552-639)||(6125377-6125464)
chr5 (548-642)||(35536933-35537026)
chr5 (548-642)||(41059693-41059787)
chr5 (675-749)||(17128258-17128333)
chr5 (580-642)||(13625456-13625518)
chr5 (574-723)||(16722033-16722182)
chr5 (574-642)||(9477424-9477492)
chr5 (694-749)||(15413972-15414028)
chr5 (574-749)||(26002977-26003153)
chr5 (574-642)||(29418682-29418750)
chr5 (574-633)||(6144835-6144894)
chr5 (548-627)||(40697109-40697188)
chr5 (565-642)||(2577349-2577426)
chr5 (558-658)||(40452391-40452492)
chr5 (559-627)||(29922104-29922172)
chr5 (575-642)||(15167645-15167712)
chr5 (548-607)||(15413953-15414012)
chr5 (575-749)||(24030195-24030369)
chr5 (454-501)||(31677101-31677148)
chr5 (558-660)||(2670130-2670231)
chr5 (548-658)||(5559823-5559933)
chr5 (558-627)||(27806018-27806088)
chr5 (708-749)||(589275-589316)
chr5 (558-599)||(1868972-1869013)
chr5 (708-749)||(4728826-4728867)
chr5 (648-749)||(6025989-6026090)
chr5 (708-749)||(13739256-13739297)
chr5 (708-749)||(22202001-22202042)
chr5 (708-749)||(29922254-29922295)
chr5 (708-749)||(33667457-33667498)
chr5 (708-749)||(33757068-33757109)
chr5 (577-642)||(42852109-42852174)
[»] chr3 (23 HSPs)
chr3 (574-749)||(29614174-29614349)
chr3 (574-749)||(3645283-3645458)
chr3 (574-749)||(20894483-20894658)
chr3 (574-642)||(31787610-31787678)
chr3 (574-660)||(17752061-17752147)
chr3 (574-660)||(19053381-19053467)
chr3 (574-642)||(33946480-33946548)
chr3 (558-658)||(40240492-40240591)
chr3 (584-627)||(51345564-51345607)
chr3 (564-630)||(32983211-32983277)
chr3 (558-607)||(53261681-53261730)
chr3 (558-658)||(43079848-43079948)
chr3 (574-642)||(52895335-52895403)
chr3 (688-749)||(4974291-4974353)
chr3 (554-632)||(10272218-10272295)
chr3 (708-746)||(25341265-25341303)
chr3 (574-627)||(3876193-3876246)
chr3 (708-749)||(20685751-20685792)
chr3 (708-749)||(22809259-22809300)
chr3 (708-749)||(23555464-23555505)
chr3 (708-749)||(29830835-29830876)
chr3 (574-627)||(36266334-36266387)
chr3 (574-627)||(43376798-43376851)
[»] chr7 (24 HSPs)
chr7 (552-632)||(29390459-29390539)
chr7 (574-749)||(44799384-44799558)
chr7 (575-659)||(14691230-14691314)
chr7 (558-723)||(29378651-29378817)
chr7 (708-749)||(18837202-18837243)
chr7 (574-749)||(28004564-28004738)
chr7 (574-748)||(991481-991655)
chr7 (565-632)||(1401171-1401238)
chr7 (574-632)||(44613403-44613461)
chr7 (574-627)||(1312216-1312269)
chr7 (693-749)||(24371455-24371512)
chr7 (548-641)||(33204923-33205016)
chr7 (693-749)||(35809070-35809127)
chr7 (572-633)||(37465814-37465875)
chr7 (708-749)||(38372538-38372579)
chr7 (574-642)||(22032850-22032918)
chr7 (552-639)||(32358700-32358787)
chr7 (694-749)||(40629467-40629522)
chr7 (564-627)||(44834903-44834966)
chr7 (584-622)||(7097085-7097123)
chr7 (708-746)||(37779343-37779381)
chr7 (580-642)||(47648625-47648687)
chr7 (574-607)||(10383586-10383619)
chr7 (708-749)||(34923055-34923096)
[»] chr6 (13 HSPs)
chr6 (544-642)||(12816801-12816900)
chr6 (558-642)||(10755197-10755281)
chr6 (574-634)||(23239343-23239403)
chr6 (574-741)||(32615345-32615512)
chr6 (560-627)||(9764307-9764374)
chr6 (574-723)||(32165191-32165340)
chr6 (552-634)||(35071336-35071418)
chr6 (574-627)||(6752915-6752968)
chr6 (708-749)||(10687287-10687328)
chr6 (574-670)||(715839-715937)
chr6 (558-632)||(2027091-2027164)
chr6 (576-662)||(17300686-17300772)
chr6 (558-607)||(21871198-21871247)
[»] chr2 (19 HSPs)
chr2 (575-749)||(38216003-38216174)
chr2 (693-749)||(2757119-2757175)
chr2 (558-642)||(8832545-8832629)
chr2 (574-749)||(32521976-32522151)
chr2 (575-749)||(4026906-4027080)
chr2 (577-749)||(27880930-27881103)
chr2 (709-749)||(2790137-2790177)
chr2 (709-749)||(4090469-4090509)
chr2 (574-658)||(21788529-21788613)
chr2 (574-749)||(22898287-22898462)
chr2 (558-642)||(29774833-29774917)
chr2 (558-630)||(37420006-37420078)
chr2 (548-607)||(4533445-4533504)
chr2 (708-747)||(27703523-27703562)
chr2 (574-659)||(446498-446583)
chr2 (709-746)||(9140795-9140832)
chr2 (560-609)||(17797149-17797198)
chr2 (708-749)||(40301332-40301373)
chr2 (558-599)||(43787746-43787787)
[»] scaffold0057 (1 HSPs)
scaffold0057 (708-746)||(43881-43919)
[»] scaffold0157 (1 HSPs)
scaffold0157 (548-643)||(24834-24929)
[»] scaffold1367 (1 HSPs)
scaffold1367 (575-658)||(1130-1213)
[»] scaffold1130 (1 HSPs)
scaffold1130 (687-749)||(2229-2291)
[»] scaffold0015 (1 HSPs)
scaffold0015 (708-749)||(48551-48592)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 320 - 634
Target Start/End: Original strand, 34526016 - 34526327
Alignment:
Q  320 ggatatgggtagtgttatagtgtattaaggttcatatcattaccgcaaaacttcaatttcaacctatgacaaaatcctactactacatcttactttaaca 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34526016 ggatatgggtagtgttatagtgtattaaggttcatatcattaccgcaaaatttcaatttcaacctatgacaaaatcctactgctacatcttactttaaca 34526115  T
Q  420 aaccagaccatgaaaccaaacaactaagactctgttgagcttatagcttataagatcatgcgacaaaaaagacctgtttgataacattttttcttctcac 519  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||    
T  34526116 aaccagaccatgaaaccaaacaactaacactctgttgagcttatagcttataagatcatgcgacaaaaaagacctgtttgataacatttt---ttctcac 34526212  T
Q  520 gagcttatatcttatttttattagttttgggtctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatatta 619  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| |||    
T  34526213 gagcttatatcttatttttattagttttgggtctgtttgaattgacttactttcgagcttatgaaaaatagtttatgcaaataaataagcttttatgtta 34526312  T
Q  620 atttataatttctca 634  Q
    ||| |||| ||||||    
T  34526313 attcataagttctca 34526327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 34525723 - 34526013
Alignment:
Q  1 cacttagtgtgccacaataaatttatgtatgttgaacccaaacgtcataaaatattgtcaaatcgcgttcaaagacattaaacacacgaatagagacggt 100  Q
    |||||| ||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  34525723 cacttaatgtgccacaataaatttatatatgttgaacccaaacatcataaaatatcgtcaaatcacgttcaaagacattaaacacacgaatagagacggt 34525822  T
Q  101 taagaatatcgtcaacgtgaatccaaacactacattaatcacaaaaaagtcaagaatattgaatcaaccaattaactagtgtctttgtcggaaaatatag 200  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  34525823 caagaatatcgtcaacgtgaatccaaacactacattgatcacaaaaaagtcaagaatattgaatcaaccaattaactagtgtctttgtcggaaaatatcg 34525922  T
Q  201 agggtaatataaagttgcacatttccataactgcctttgtgacagaatcttgaaataatttttgtaacataaaacattattctaggtagtac 292  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34525923 agggtaatatatagttgcacatttccataactg-ctttgtgacagaatcttgaaataatttttgtaacataaaacattattccaggtagtac 34526013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 574 - 749
Target Start/End: Original strand, 42617160 - 42617335
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    ||||||||||||||||| ||||| || |||||||  || ||| ||||||||||| || ||| |||||||    |||||||||||||| |||| |||| ||    
T  42617160 gagcttatgaaaaatagcttatgtaaataaataagtttttattttaatttataagttttcactaacgaaaatcatatcttcataaactattttttcataa 42617259  T
Q  674 cctactttgataaatttaaaaataatacat-taatcttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
     |||| || | ||| ||| ||||||||| |  || | |||||||||||||| |||||||||||||||||| ||||||    
T  42617260 actacctt-aaaaacttataaataatacttaaaaacgtatttatttgcataagctgttttgtataagctctaaaata 42617335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 574 - 741
Target Start/End: Original strand, 4603262 - 4603429
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    |||||||||||||||| |||||| || ||||||| ||| ||| |||||||||||  ||||| |||||||   | |||||||||||||  ||| |||| ||    
T  4603262 gagcttatgaaaaatattttatgtaaataaataagcttttattttaatttataaactctcactaacgaaaattgtatcttcataaactgttttttcataa 4603361  T
Q  674 cctactttgataaatttaaaaataatacat-taatcttatttatttgcatatgctgttttgtataagct 741  Q
     |||| || | ||| ||| |||||||||||  || |||||||||||||||| | |||||| ||||||||    
T  4603362 actacctt-aaaaaattataaataatacataaaaacttatttatttgcataagttgttttatataagct 4603429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 574 - 749
Target Start/End: Original strand, 46175909 - 46176084
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    ||||||||||||||||  ||||| || ||||||| | | ||| |||||||||||  ||| | || ||||   | ||||||||||||| |||| |||| ||    
T  46175909 gagcttatgaaaaataacttatgtaaataaataagcatttattttaatttataagctcttactagcgaaaattgtatcttcataaactattttttcataa 46176008  T
Q  674 cctactttgataaatttaaaaataatacattaat-cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
     |||| || | ||||||| ||||||||||| ||  |||||||||||||||| |||||||| ||||||||| ||||||    
T  46176009 actaccttaa-aaatttataaataatacataaaaacttatttatttgcataagctgttttatataagctctaaaata 46176084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 577 - 642
Target Start/End: Complemental strand, 897123 - 897058
Alignment:
Q  577 cttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    ||||||||||||||||||||||| ||||||| ||| ||||||||||||||| || ||| |||||||    
T  897123 cttatgaaaaatagtttatgcaaataaataagcttttatattaatttataagttttcactaacgaa 897058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 558 - 627
Target Start/End: Complemental strand, 3564378 - 3564309
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataa 627  Q
    ||||||||||| ||| ||||||||||||||||| |||||||| ||||||| ||| ||| |||||||||||    
T  3564378 ggattgacttatttttgagcttatgaaaaatagcttatgcaaataaataatcttttatgttaatttataa 3564309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 574 - 658
Target Start/End: Original strand, 18630825 - 18630909
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataa 658  Q
    ||||||||||||||||| |||||||| ||||||| ||| |||||||||| |||| |||||| |||||||   | |||||||||||    
T  18630825 gagcttatgaaaaatagcttatgcaaataaataagcttttatattaattcataagttctcactaacgaaaactttatcttcataa 18630909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 558 - 634
Target Start/End: Complemental strand, 28663744 - 28663668
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctca 634  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||| ||| ||| ||| ||| || |||| ||||||    
T  28663744 ggattgacttatttttgagcttatgaaaaatagtttatgcaactaattaagcttttatgttagttcataagttctca 28663668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 575 - 749
Target Start/End: Complemental strand, 15184701 - 15184527
Alignment:
Q  575 agcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaac 674  Q
    ||||||| |||||||| ||||  ||  ||||||  || ||| ||||||||||| |||||| |||||||   | |||||||||||||  ||| |||| ||     
T  15184701 agcttatcaaaaatagcttatataagcaaataagtttttattttaatttataagttctcactaacgaaaattgtatcttcataaactgttttttcataaa 15184602  T
Q  675 ctactttgataaatttaaaaataatacattaat-cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    ||||||| | ||||| | ||||||||||| ||  ||||||||||| |||| |||||||| ||||||||| ||||||    
T  15184601 ctactttaaaaaatt-ataaataatacataaaaacttatttatttacataagctgttttatataagctctaaaata 15184527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 552 - 634
Target Start/End: Complemental strand, 48687111 - 48687030
Alignment:
Q  552 ctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctca 634  Q
    ||||| |||||| |||| ||| ||||||||||||| ||| |||||||| ||||||||||||||| |||||| |||| ||||||    
T  48687111 ctgtttggattgccttatttttgagcttatgaaaa-tagcttatgcaaataaataaacttatatgttaattcataagttctca 48687030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 578 - 627
Target Start/End: Complemental strand, 25638412 - 25638363
Alignment:
Q  578 ttatgaaaaatagtttatgcaactaaataaacttatatattaatttataa 627  Q
    |||||||||||||||||||||| |||||||| || |||||||||||||||    
T  25638412 ttatgaaaaatagtttatgcaaataaataaatttttatattaatttataa 25638363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 642
Target Start/End: Complemental strand, 11298738 - 11298670
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    ||||||||||||||||| |||||||| ||||||||||| |||| |||||  ||| |||||| |||||||    
T  11298738 gagcttatgaaaaatagcttatgcaaataaataaacttttataataattcttaagttctcactaacgaa 11298670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 658
Target Start/End: Original strand, 48591338 - 48591438
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcata 657  Q
    |||||| |||| ||| ||||||||||||||||| |||||||| ||||||| ||| ||  |||||| |||| |||||| |||||||   | ||||||||||    
T  48591338 ggattggcttatttttgagcttatgaaaaatagcttatgcaaataaataagcttttacgttaattcataagttctcattaacgaaaattgtatcttcata 48591437  T
Q  658 a 658  Q
    |    
T  48591438 a 48591438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 548 - 643
Target Start/End: Original strand, 12495548 - 12495643
Alignment:
Q  548 gggtctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaat 643  Q
    ||||| ||| |||||| |||| ||| ||||||||||||| ||| |||||||| |||||||  || ||| ||||||||||| |||||| ||| ||||    
T  12495548 gggtccgtttggattgtcttatttttgagcttatgaaaagtagcttatgcaaataaataagtttttatgttaatttataagttctcactaatgaat 12495643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 749
Target Start/End: Complemental strand, 23297591 - 23297418
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    ||||||||||||||||| |||||||| ||||||| ||| |||  ||||| |||| |||||  |||| ||   | ||||||||||| |  |||   || ||    
T  23297591 gagcttatgaaaaatagcttatgcaaataaataagcttttatgctaattcataagttctcgctaacaaaaattgtatcttcataagctgttt---cataa 23297495  T
Q  674 cctactttgataaatttaaaaataatacattaat-cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
     |||| |||| ||| |||  |||||||||| ||  |||||||||||||||| ||| ||||| |||||||||||||||    
T  23297494 actaccttgacaaacttatgaataatacataaaagcttatttatttgcataagctattttgcataagctcaaaaata 23297418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 560 - 658
Target Start/End: Complemental strand, 48721990 - 48721892
Alignment:
Q  560 attgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataa 658  Q
    ||||||||| |||  ||||||| ||||||| ||||| ||| ||||||| ||| |||||||||| |||| |||||| |||| ||   |||||||||||||    
T  48721990 attgacttattttttagcttataaaaaataatttatacaaataaataagcttttatattaattcataagttctcactaacaaaaattatatcttcataa 48721892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 634
Target Start/End: Original strand, 488289 - 488374
Alignment:
Q  549 ggtctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctca 634  Q
    |||| ||| |||||||||||||||  ||||||| |||||||| ||||| || ||||||| ||| ||| |||||| |||| ||||||    
T  488289 ggtccgtttggattgacttacttttaagcttataaaaaatagcttatggaaataaataagcttttatgttaattcataagttctca 488374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 634
Target Start/End: Original strand, 9153512 - 9153572
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctca 634  Q
    ||||| || |||||||| |||||||| ||||||||||| ||| ||||||||||| ||||||    
T  9153512 gagctaattaaaaatagcttatgcaaataaataaacttttatgttaatttataaattctca 9153572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 575 - 639
Target Start/End: Complemental strand, 22273935 - 22273871
Alignment:
Q  575 agcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaac 639  Q
    |||||| ||||||||| |||||||| ||||||||||| ||| |||||| |||| |||||| ||||    
T  22273935 agcttacgaaaaatagattatgcaaataaataaacttttatgttaattcataacttctcactaac 22273871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 741
Target Start/End: Complemental strand, 47202981 - 47202814
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    ||||||||||||||||  ||||  || ||| ||| ||| ||| |||||||||||  ||||| |||||||   | ||||||||||||   ||| |||| ||    
T  47202981 gagcttatgaaaaataacttatataaataagtaagcttttattttaatttataagatctcactaacgaaaattgtatcttcataaatggttttttcataa 47202882  T
Q  674 cctactttgataaatttaaaaataatacattaat-cttatttatttgcatatgctgttttgtataagct 741  Q
     |||| || | ||||||| || |||||||| ||  |||||||||||||||| |||||||| ||||||||    
T  47202881 actaccttaa-aaatttataagtaatacataaaaacttatttatttgcataagctgttttatataagct 47202814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 627
Target Start/End: Original strand, 38876054 - 38876105
Alignment:
Q  576 gcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataa 627  Q
    ||||||||||||||| |||||||| ||||||||||| ||| |||||| ||||    
T  38876054 gcttatgaaaaatagcttatgcaaataaataaacttttatgttaattcataa 38876105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 695 - 749
Target Start/End: Complemental strand, 35405719 - 35405665
Alignment:
Q  695 ataatacattaatcttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    ||||||||| ||||||| ||||||| ||| | ||||||| |||||||||||||||    
T  35405719 ataatacataaatcttagttatttgtataagttgttttgcataagctcaaaaata 35405665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 574 - 632
Target Start/End: Complemental strand, 41229059 - 41229001
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttct 632  Q
    ||||||||||||||||| |||||||| ||||| | ||| |||||||||| |||| ||||    
T  41229059 gagcttatgaaaaatagcttatgcaaataaattagcttttatattaattcataagttct 41229001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 659
Target Start/End: Original strand, 2547977 - 2548062
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaa 659  Q
    |||||||||| ||| || |||||||| |||||||  || ||||||||||||||| |||||| || ||||   | ||||||||||||    
T  2547977 gagcttatgagaaagagcttatgcaaataaataagtttttatattaatttataagttctcattagcgaaaattttatcttcataaa 2548062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 658
Target Start/End: Complemental strand, 17223006 - 17222901
Alignment:
Q  553 tgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatct 652  Q
    |||| |||||| |||| ||| ||||||||||||||||| |||| ||| |||||||  || ||| |||||| |||| |||| | |||||||   | |||||    
T  17223006 tgtttggattggcttatttttgagcttatgaaaaatagcttattcaaataaataagtttttatgttaattcataagttctaactaacgaaaattgtatct 17222907  T
Q  653 tcataa 658  Q
    ||||||    
T  17222906 tcataa 17222901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 749
Target Start/End: Complemental strand, 19414150 - 19414109
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||||||||||||||| |||||||| ||||||||| ||||||    
T  19414150 cttatttatttgcataagctgttttctataagctctaaaata 19414109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 607
Target Start/End: Complemental strand, 30956856 - 30956807
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataa 607  Q
    ||||||||||| |||  |||||||||||||||| |||||||| |||||||    
T  30956856 ggattgacttattttttagcttatgaaaaatagcttatgcaaataaataa 30956807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 1e-58; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 558 - 753
Target Start/End: Original strand, 26435089 - 26435284
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcata 657  Q
    ||||||||||| |||  ||||||||||||||||||||||||| |||||| |||||||| |||||| |||| ||||||||||||||  || ||||||||||    
T  26435089 ggattgacttatttttaagcttatgaaaaatagtttatgcaaataaatagacttatatgttaattcataagttctcagtaacgaaaaatgtatcttcata 26435188  T
Q  658 aacaatttgttcagaacctactttgataaatttaaaaataatacattaatcttatttatttgcatatgctgttttgtataagctcaaaaatatgtc 753  Q
    |||| ||| |||| || ||||||||| ||| ||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||    
T  26435189 aacagttttttcataaactactttgacaaacttaaaaataatacataaaacttatttatttgcataagctgttttgtataagctcaaaaatatgtc 26435284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 574 - 749
Target Start/End: Original strand, 32497202 - 32497377
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    ||||||||||||||||| ||||| || ||||||||||| ||| |||||||||||  ||||| |||||||   | |||| ||||||||  ||| |||| ||    
T  32497202 gagcttatgaaaaatagcttatgtaaataaataaacttttattttaatttataagctctcactaacgaaaattgtatcctcataaactgttttttcataa 32497301  T
Q  674 cctactttgataaatttaaaaataatacat-taatcttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
     |||| || | ||| ||| |||||||||||  || |||||||||||||||| |||||||| ||||||||| ||||||    
T  32497302 actacctt-aaaaacttataaataatacataaaaacttatttatttgcataagctgttttatataagctccaaaata 32497377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 574 - 749
Target Start/End: Complemental strand, 15791539 - 15791364
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    ||||||||||||||||| ||||| || ||||||| ||| ||| |||||||||||  ||||| |||||||   | ||||||||| ||| |||| |||| ||    
T  15791539 gagcttatgaaaaatagcttatgtaaataaataagcttttattttaatttataagctctcattaacgaaaattgtatcttcattaacgattttttcataa 15791440  T
Q  674 cctactttgataaatttaaaaataatacat-taatcttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
     |||| || | ||| ||| |||||||||||  || ||||||||||| |||| |||||||| ||||||||| ||||||    
T  15791439 actacctt-aaaaacttataaataatacataaaaacttatttatttacataagctgttttatataagctctaaaata 15791364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 574 - 749
Target Start/End: Original strand, 17628355 - 17628530
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    ||||||||||||||||| ||||| || ||||||| ||| ||| |||||||| ||  ||||| |||||||   | |||||||||||||  ||| |||| ||    
T  17628355 gagcttatgaaaaatagcttatgtaaataaataagcttttattttaatttagaagctctcactaacgaaaattgtatcttcataaacggttttttcataa 17628454  T
Q  674 cctactttgataaatttaaaaataatacat-taatcttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
     |||| || | ||| ||| |||||||||||  || |||||||||||| ||| |||||||| ||||||||| ||||||    
T  17628455 actacctt-aaaaacttataaataatacataaaaacttatttatttgtataagctgttttatataagctctaaaata 17628530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 551 - 630
Target Start/End: Complemental strand, 47413551 - 47413472
Alignment:
Q  551 tctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataattt 630  Q
    |||||| |||||| |||| ||| ||||||||||||||||| |||||||| ||||||| ||| ||| ||||||||||||||    
T  47413551 tctgtttggattggcttatttttgagcttatgaaaaatagcttatgcaaataaataagcttttatgttaatttataattt 47413472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 552 - 658
Target Start/End: Complemental strand, 37712245 - 37712139
Alignment:
Q  552 ctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatc 651  Q
    ||||| ||||||||||| ||| ||||||| ||||||||| |||||||| ||||||||||| ||| |||||| |||| |||| | |||||||   | ||||    
T  37712245 ctgtttggattgacttatttttgagcttacgaaaaatagcttatgcaaataaataaacttttatgttaattcataagttcttactaacgaaagttgtatc 37712146  T
Q  652 ttcataa 658  Q
    |||||||    
T  37712145 ttcataa 37712139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 574 - 744
Target Start/End: Original strand, 9572714 - 9572886
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    ||||||||||||||||| |||||||| ||||||| ||| |||||||||| |||| |||||| |||| ||   | ||||||||||||   ||| |||| ||    
T  9572714 gagcttatgaaaaatagcttatgcaaataaataagcttttatattaattcataagttctcactaacaaaaactttatcttcataaattgttttttcataa 9572813  T
Q  674 cctactttgataaatttaaaaataatacat--taatcttatttatttgcatatgctgttttgtataagctcaa 744  Q
     |||| || | ||| |||  ||||||| ||   || |||||||||||||| | ||||||||| ||||||||||    
T  9572814 actaccttaacaaacttatgaataataaataaaaagcttatttatttgcaaaagctgttttgcataagctcaa 9572886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 577 - 658
Target Start/End: Complemental strand, 13039100 - 13039019
Alignment:
Q  577 cttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataa 658  Q
    |||||||||||||| |||||||| ||||||||||| |||||||||| |||| |||||| |||||||   | |||||||||||    
T  13039100 cttatgaaaaatagcttatgcaaataaataaacttttatattaattcataacttctcactaacgaaaactttatcttcataa 13039019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 574 - 634
Target Start/End: Complemental strand, 19220329 - 19220269
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctca 634  Q
    |||||||||||||||||||||||||| ||||||| ||| ||| |||||||||||| |||||    
T  19220329 gagcttatgaaaaatagtttatgcaaataaataagcttttattttaatttataatctctca 19220269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 558 - 749
Target Start/End: Complemental strand, 28690176 - 28689982
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcata 657  Q
    ||||||||||  ||| ||||||||||||||||| |||||||| ||||||| ||| ||| |||||| | ||||||||| |||  ||   | ||||||||||    
T  28690176 ggattgacttgtttttgagcttatgaaaaatagcttatgcaaataaataagcttttatgttaattcagaatttctcactaataaaaattgtatcttcata 28690077  T
Q  658 aacaatttgttcagaacctactttgataaatttaaaaataatacattaa---tcttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    | |  |||||||| || |||| |||| ||| |||  |||||||||| ||   |  |||||||||||||| |||||| || |||| || |||||||    
T  28690076 agctgtttgttcataaactaccttgacaaacttatgaataatacataaaaccttatatttatttgcataagctgttctgcataaactaaaaaata 28689982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 575 - 749
Target Start/End: Original strand, 5243335 - 5243509
Alignment:
Q  575 agcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaac 674  Q
    ||||| |||||||||  ||||| || ||||||| ||| ||| ||||||||||   |||| ||||||||   | ||||||||||||| |||| |||| ||     
T  5243335 agcttgtgaaaaataacttatgtaaataaataagcttttattttaatttatatgctctccgtaacgaaaattgtatcttcataaactattttttcataaa 5243434  T
Q  675 ctactttgataaatttaaaaataatacattaat-cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||| || | ||| ||| ||||||||||  ||  |||||||||||||||| |||||||| ||||||||| ||||||    
T  5243435 ctaccttaa-aaacttataaataatacacaaaaacttatttatttgcataagctgttttatataagctctaaaata 5243509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 548 - 627
Target Start/End: Complemental strand, 26988330 - 26988251
Alignment:
Q  548 gggtctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataa 627  Q
    |||| |||| ||||||||||| ||| |||||||||||||||||||||||||| ||||| | ||| ||| |||||| ||||    
T  26988330 gggtatgtttggattgacttatttttgagcttatgaaaaatagtttatgcaaataaattagcttttatgttaattcataa 26988251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 558 - 723
Target Start/End: Original strand, 37329326 - 37329492
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcata 657  Q
    |||| |||||| ||| ||||||||||||||||  |||||||| ||||||| ||| ||| ||||||||||| ||||||  ||||||   | ||||||||||    
T  37329326 ggatcgacttatttttgagcttatgaaaaataacttatgcaaataaataagcttttatgttaatttataagttctcaccaacgaaaattgtatcttcata 37329425  T
Q  658 aacaatttgttcagaacctactttgataaatttaaaaataatacat-taatcttatttatttgcata 723  Q
    | |  ||| |||| || |||| |||| || ||||  ||||||||||  || || |||||||||||||    
T  37329426 agctgttttttcataaactaccttgacaagtttatgaataatacataaaagctcatttatttgcata 37329492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 558 - 723
Target Start/End: Complemental strand, 48819471 - 48819305
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcata 657  Q
    |||||| |||| |||  |||||||||||||||| |||||||| ||||||| ||| ||| |||||| |||| |||||| |||| ||  || ||||||||||    
T  48819471 ggattggcttattttttagcttatgaaaaatagcttatgcaaataaataagcttttatgttaattcataagttctcactaacaaaaaatgtatcttcata 48819372  T
Q  658 aacaatttgttcagaacctactttgataaatttaaaaataatacatt-aatcttatttatttgcata 723  Q
    | |  ||| |||| || |||| |||| ||  |||  ||||||||||| || || |||||||||||||    
T  48819371 agctgttttttcataaactaccttgacaagcttatgaataatacattaaagctcatttatttgcata 48819305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 558 - 627
Target Start/End: Original strand, 35897533 - 35897602
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataa 627  Q
    ||||||||||| ||| || |||||||||||||| ||||| || ||||||||||| ||| |||||||||||    
T  35897533 ggattgacttatttttgaacttatgaaaaatagcttatgtaaataaataaacttttatgttaatttataa 35897602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 577 - 658
Target Start/End: Original strand, 36422914 - 36422995
Alignment:
Q  577 cttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataa 658  Q
    |||||||| ||||  |||||||| ||||||||||| ||||||| ||||||| |||||| ||||||| | | |||||||||||    
T  36422914 cttatgaagaataacttatgcaaataaataaacttttatattattttataacttctcactaacgaaatttttatcttcataa 36422995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 578 - 642
Target Start/End: Complemental strand, 4068267 - 4068203
Alignment:
Q  578 ttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    ||||||||| ||| |||||||| ||||||||||| |||||||||| |||| |||||| |||||||    
T  4068267 ttatgaaaagtagcttatgcaaataaataaacttttatattaattcataagttctcactaacgaa 4068203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 642
Target Start/End: Original strand, 46689480 - 46689548
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    ||||||||||||||||  |||||||| ||||||||||  |||||||||| |||| |||||| |||||||    
T  46689480 gagcttatgaaaaataacttatgcaaataaataaactattatattaattcataagttctcactaacgaa 46689548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 574 - 742
Target Start/End: Complemental strand, 51162425 - 51162256
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    |||||||| ||||| ||||||||||| ||| ||||||| ||| |||||||||||  ||| | |||||||   | ||| |||||||    ||| |||| ||    
T  51162425 gagcttataaaaaaaagtttatgcaaataattaaacttttatgttaatttataagatcttattaacgaaaattgtatattcataagttgttttttcataa 51162326  T
Q  674 cctactttgataaatttaaaaataatacattaat-cttatttatttgcatatgctgttttgtataagctc 742  Q
     |||| || | ||| ||  ||||||||||||||| |||||||||||||||| |||  |||| ||||||||    
T  51162325 actaccttaacaaacttgtaaataatacattaatgcttatttatttgcataagctactttgcataagctc 51162256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 622
Target Start/End: Complemental strand, 28122774 - 28122726
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatt 622  Q
    ||||||||||||||||||||||| || ||||||| ||| ||||||||||    
T  28122774 gagcttatgaaaaatagtttatgaaaataaataagcttttatattaatt 28122726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 642
Target Start/End: Original strand, 49738215 - 49738299
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    ||||||||||| |||  ||||||| |||||| |||||||||| ||  ||| ||| |||||||||| |||| |||||| |||||||    
T  49738215 ggattgacttattttttagcttataaaaaattgtttatgcaagtatgtaagcttctatattaattcataagttctcactaacgaa 49738299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 574 - 660
Target Start/End: Original strand, 41576325 - 41576411
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaac 660  Q
    ||||||||||  ||||| |||||||| ||||||||||| ||| ||||| ||||| || ||| |||| ||   |||||||||||||||    
T  41576325 gagcttatgatgaatagattatgcaaataaataaacttttatgttaatatataagttatcactaacaaaaattatatcttcataaac 41576411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 749
Target Start/End: Complemental strand, 391189 - 391148
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||||||||||||||| ||||||||| |||| ||||||||||    
T  391189 cttatttatttgcataagctgttttgcataacctcaaaaata 391148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 627
Target Start/End: Original strand, 4491314 - 4491363
Alignment:
Q  578 ttatgaaaaatagtttatgcaactaaataaacttatatattaatttataa 627  Q
    |||||||| ||||||||||||| ||||||| ||| |||||||||| ||||    
T  4491314 ttatgaaagatagtttatgcaaataaataatcttttatattaattaataa 4491363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 642
Target Start/End: Complemental strand, 9575481 - 9575416
Alignment:
Q  577 cttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    ||||||||||||||||||| ||| |||||||| |  ||| ||||||||||| |||||  |||||||    
T  9575481 cttatgaaaaatagtttatacaaataaataaattattatgttaatttataaattctctctaacgaa 9575416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 642
Target Start/End: Complemental strand, 12828277 - 12828212
Alignment:
Q  577 cttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    |||||||||||| | |||||||| || |||||||| ||||||||| ||||| || ||| |||||||    
T  12828277 cttatgaaaaattgcttatgcaaatagataaacttttatattaatctataagttttcattaacgaa 12828212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 660
Target Start/End: Complemental strand, 19285053 - 19284968
Alignment:
Q  575 agcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaac 660  Q
    ||||||| |||||||||||||  || |||||||| || ||| ||||| |||||||| ||| |||||||   | |||||||||||||    
T  19285053 agcttataaaaaatagtttatttaagtaaataaatttttattttaatctataatttttcactaacgaaaattgtatcttcataaac 19284968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 639
Target Start/End: Original strand, 22593337 - 22593402
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaac 639  Q
    ||||||||| |||| || |||||||| ||||||| ||| ||| ||||||||||| |||||| ||||    
T  22593337 gagcttatgcaaaacagcttatgcaaataaataagcttttatgttaatttataagttctcactaac 22593402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 749
Target Start/End: Complemental strand, 29333454 - 29333397
Alignment:
Q  693 aaataatacattaat-cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    ||||||||||||||| |||||||||||| |||||||| |||| ||||| || ||||||    
T  29333454 aaataatacattaatacttatttatttgtatatgctgctttgcataagttctaaaata 29333397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 741
Target Start/End: Original strand, 37148142 - 37148191
Alignment:
Q  693 aaataatacattaat-cttatttatttgcatatgctgttttgtataagct 741  Q
    ||||||||||||||| |||||||||||||||| |||| |||| |||||||    
T  37148142 aaataatacattaatgcttatttatttgcataagctgctttgcataagct 37148191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 741
Target Start/End: Original strand, 37156967 - 37157016
Alignment:
Q  693 aaataatacattaat-cttatttatttgcatatgctgttttgtataagct 741  Q
    ||||||||||||||| |||||||||||||||| |||| |||| |||||||    
T  37156967 aaataatacattaatgcttatttatttgcataagctgctttgcataagct 37157016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 575 - 749
Target Start/End: Complemental strand, 12607234 - 12607060
Alignment:
Q  575 agcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaac 674  Q
    |||||||||||||||| ||||| || ||||||| ||| ||| |||||||||||  ||||| ||||| |   | |||||||||||||  ||| |||| ||     
T  12607234 agcttatgaaaaatagcttatgtaaataaataagcttttattttaatttataagctctcactaacggaaattgtatcttcataaaccgttttttcataaa 12607135  T
Q  675 ctactttgataaatttaaaaataatacattaat-cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||| || | ||| ||| ||||||||||| ||  ||||||||||||||||||||||||| ||||||||| ||||||    
T  12607134 ctaccttaa-aaacttataaataatacataaaaacttatttatttgcatatgctgttttatataagctctaaaata 12607060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 574 - 749
Target Start/End: Complemental strand, 42102262 - 42102087
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    ||||||||||||||||| ||||| || ||||||| ||| ||| |||||||||||  ||||| |||||||   | ||||||||| |||  ||| |||| ||    
T  42102262 gagcttatgaaaaatagcttatgtaaataaataagcttttattttaatttataacctctcattaacgaaaattgtatcttcattaacggttttttcataa 42102163  T
Q  674 cctactttgataaatttaaaaataatacat-taatcttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
     |||| || | ||| ||| |||||||||||  || |||||||||||||||| |||||||| ||||||||| ||||||    
T  42102162 actacctt-aaaaacttataaataatacataaaaacttatttatttgcataagctgttttatataagctctaaaata 42102087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 578 - 749
Target Start/End: Original strand, 38338785 - 38338956
Alignment:
Q  578 ttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaaccta 677  Q
    ||||||||||||| ||||| || |||||||  || ||| ||||||||||| |||||| |||||||    |||||||||||||| |||| |||| || |||    
T  38338785 ttatgaaaaatagcttatgtaaataaataagtttttattttaatttataagttctcactaacgaaaatcatatcttcataaactattttttcataaacta 38338884  T
Q  678 ctttgataaatttaaaaataatacat-taatcttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    | || | ||| ||| ||||||||  |  || |||||||||||||||| |||||||| ||||||||| ||||||    
T  38338885 cctt-aaaaacttataaataatatttaaaaacttatttatttgcataagctgttttatataagctctaaaata 38338956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 560 - 658
Target Start/End: Original strand, 34286480 - 34286578
Alignment:
Q  560 attgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataa 658  Q
    ||||||||| ||| ||||||||||||||||| |||||||| ||||||| ||| |||||||||| |||| |||||  |||||||   | |||||||||||    
T  34286480 attgacttatttttgagcttatgaaaaataggttatgcaaataaataagcttttatattaattcataagttctccctaacgaaaattgtatcttcataa 34286578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 574 - 749
Target Start/End: Complemental strand, 32131596 - 32131420
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    |||||||||||||||||||||||||| || |||| ||| ||| |||||| |||| |||||| ||  |||   | ||||||||||     ||| |||| ||    
T  32131596 gagcttatgaaaaatagtttatgcaaatagataagcttttatgttaattcataagttctcactattgaaaattgtatcttcataggttgtttattcataa 32131497  T
Q  674 cctactttgataaatttaaaaataatacattaat-cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
     |||| |||| ||| |||  |||||| ||| ||  |||||||||||||||| ||||||||| |||||||||||||||    
T  32131496 actaccttgacaaacttaggaataatgcataaaagcttatttatttgcataagctgttttgcataagctcaaaaata 32131420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 574 - 749
Target Start/End: Original strand, 37410843 - 37411018
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    ||||||||||||||||| ||||| || |||||||  |||||| ||||||||||| |||| | |||||||   | ||||||||| |||  ||| |||| ||    
T  37410843 gagcttatgaaaaatagcttatgtaaataaataagtttatattttaatttataagttcttactaacgaaaattgtatcttcatgaactgttttttcataa 37410942  T
Q  674 cctactttgataaatttaaaaataatacat-taatcttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
     |||| || | ||| ||| |||||||||||  || ||||||||||| ||||  ||||||| ||||||||| ||||||    
T  37410943 actacctt-aaaaaattataaataatacataaaaacttatttatttacataaactgttttatataagctctaaaata 37411018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 574 - 634
Target Start/End: Original strand, 41145326 - 41145386
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctca 634  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||| |||| ||||||    
T  41145326 gagcttatgaaaaatagtttatgcaaataaataagtttatatattaattcataagttctca 41145386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 551 - 658
Target Start/End: Original strand, 16972263 - 16972370
Alignment:
Q  551 tctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatat 650  Q
    |||||| ||||||||||| ||| ||||||||  ||||||| |||||||| ||||||||||| |||||| ||| |||| || ||| |||||||   | |||    
T  16972263 tctgtttggattgacttaattttgagcttattcaaaatagcttatgcaaataaataaacttttatattgattcataagttatcactaacgaaaattgtat 16972362  T
Q  651 cttcataa 658  Q
    ||||||||    
T  16972363 cttcataa 16972370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 574 - 723
Target Start/End: Complemental strand, 28280865 - 28280715
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    |||||||||||||| || |||||||| |||||||  || ||| |||||| |||| |||||| |||| ||   |||| ||||||||||| ||| |||| ||    
T  28280865 gagcttatgaaaaagagcttatgcaaataaataagtttttatcttaattcataagttctcactaacaaaaggtataccttcataaacagttttttcataa 28280766  T
Q  674 cctactttgataaatttaaaaataatacattaat-cttatttatttgcata 723  Q
     |||| || | ||| ||| ||||||||||| ||| | ||||||||||||||    
T  28280765 actacattaacaaacttataaataatacataaatgcatatttatttgcata 28280715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 550 - 639
Target Start/End: Complemental strand, 10213875 - 10213786
Alignment:
Q  550 gtctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaac 639  Q
    ||||||| ||||||  ||| ||| ||||||||||||||||| |||||||| ||||||| ||| ||| |||||| |||| |||||| ||||    
T  10213875 gtctgtttggattggattatttttgagcttatgaaaaatagcttatgcaaataaataagcttgtatgttaattcataagttctcactaac 10213786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 634
Target Start/End: Complemental strand, 32975843 - 32975783
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctca 634  Q
    ||||||||||||||||| |||||||| ||||||| ||| |||||||||| |||| ||||||    
T  32975843 gagcttatgaaaaatagcttatgcaaataaataagcttttatattaattcataagttctca 32975783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 457 - 534
Target Start/End: Original strand, 2110862 - 2110938
Alignment:
Q  457 agcttatagcttataagatcatgcgacaaaaaag-acctgtttgataacattttttcttctcacgagcttatatcttat 534  Q
    ||||||||||||||||| ||||  |||||| ||| ||||||||| |||||||||||  ||||||||||||||| |||||    
T  2110862 agcttatagcttataagctcatatgacaaagaaggacctgtttgttaacatttttt--tctcacgagcttataacttat 2110938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 583 - 749
Target Start/End: Original strand, 42363256 - 42363422
Alignment:
Q  583 aaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaacctactttg 682  Q
    |||||||| ||||| || ||||||| ||| ||| |||||||| || |||||| |||| ||   | |||||||||||||  ||| |||| || |||| ||     
T  42363256 aaaaatagcttatgtaaataaataagcttttattttaatttaaaagttctcactaacaaaaattgtatcttcataaacggttttttcataaactacctta 42363355  T
Q  683 ataaatttaaaaataatacattaat-cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    | ||| ||| ||||||||||| ||  |||||||||||||||| ||| |||| ||||||||| ||||||    
T  42363356 a-aaacttataaataatacataaaaacttatttatttgcataagctattttatataagctctaaaata 42363422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 632
Target Start/End: Complemental strand, 28879227 - 28879153
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttct 632  Q
    ||||||||||| |||  |||||||||||||||| |||||||| ||||||| ||| ||| |||||| |||| ||||    
T  28879227 ggattgacttattttttagcttatgaaaaatagcttatgcaaataaataagcttttatgttaattcataagttct 28879153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 574 - 659
Target Start/End: Complemental strand, 38895815 - 38895730
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaa 659  Q
    ||||||||||||| |||||||| ||| |||||||  || ||||||||||||||| || ||| |||| |||  | ||||||||||||    
T  38895815 gagcttatgaaaattagtttatacaaataaataagtttttatattaatttataagttttcactaacaaatattgtatcttcataaa 38895730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 575 - 627
Target Start/End: Original strand, 9131059 - 9131111
Alignment:
Q  575 agcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataa 627  Q
    |||||||||||||||| |||||||| ||||||||||| ||| |||||| ||||    
T  9131059 agcttatgaaaaatagcttatgcaaataaataaacttttatgttaattcataa 9131111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 642
Target Start/End: Complemental strand, 24087343 - 24087259
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    ||||||||||| ||| |||   ||||||||||| |||||||| ||||||| ||| ||| ||||||||||| || ||| |||||||    
T  24087343 ggattgacttatttttgagtgaatgaaaaatagcttatgcaaataaataagcttttattttaatttataagttttcattaacgaa 24087259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 562 - 658
Target Start/End: Original strand, 24350437 - 24350533
Alignment:
Q  562 tgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataa 658  Q
    ||||||| ||| ||||||||||||| ||| |||||||| |||||||  || ||| |||||| |||| |||| | |||||||   |||||||||||||    
T  24350437 tgacttatttttgagcttatgaaaactagcttatgcaaataaataagattttatgttaattcataagttcttactaacgaaaattatatcttcataa 24350533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 558 - 643
Target Start/End: Complemental strand, 15763260 - 15763177
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaat 643  Q
    ||||||||||| ||| ||| ||||||||||||| |||||||| | ||||||  | ||| |||| ||||||||||||  ||||||||    
T  15763260 ggattgacttatttttgagtttatgaaaaatagcttatgcaaattaataaa--tttattttaaattataatttctcgctaacgaat 15763177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 749
Target Start/End: Original strand, 19925432 - 19925494
Alignment:
Q  688 tttaaaaataatacattaat-cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||| ||||||||||||||| ||||||||||||||||  ||||| || |||||||| ||||||    
T  19925432 tttataaataatacattaatgcttatttatttgcataaactgttatgcataagctctaaaata 19925494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 578 - 644
Target Start/End: Original strand, 25671824 - 25671890
Alignment:
Q  578 ttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaatt 644  Q
    ||||||||||||| ||||| || ||||||| ||| ||| ||||||||||| || ||| |||||||||    
T  25671824 ttatgaaaaatagcttatgtaaataaataagcttttatgttaatttataagttttcactaacgaatt 25671890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 576 - 634
Target Start/End: Original strand, 32212947 - 32213005
Alignment:
Q  576 gcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctca 634  Q
    ||||||||||||||| |||||||| ||||||| ||| ||| ||| ||||||| ||||||    
T  32212947 gcttatgaaaaatagcttatgcaaataaataagcttttatgttattttataagttctca 32213005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 749
Target Start/End: Complemental strand, 19925578 - 19925537
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||||||||||||||| |||||||||||||||| | ||||||    
T  19925578 cttatttatttgcataagctgttttgtataagccctaaaata 19925537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 639
Target Start/End: Original strand, 25465781 - 25465842
Alignment:
Q  578 ttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaac 639  Q
    ||||||||||||| |||||||| ||||||| ||| ||| |||||| |||| || ||||||||    
T  25465781 ttatgaaaaatagcttatgcaaataaataagcttttatgttaattcataagttttcagtaac 25465842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 749
Target Start/End: Complemental strand, 30974034 - 30973969
Alignment:
Q  685 aaatttaaaaataatacattaat-cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    ||||||| ||||||||||||||| ||| ||||||| |||| |||| |||| |||||||| ||||||    
T  30974034 aaatttataaataatacattaatgcttctttatttacataagctgctttgcataagctctaaaata 30973969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 749
Target Start/End: Complemental strand, 43577266 - 43577201
Alignment:
Q  685 aaatttaaaaataatacattaatctt-atttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    ||||||| ||||||||||||||| || |||||||||||||  || ||||| |||||||| ||||||    
T  43577266 aaatttataaataatacattaatatttatttatttgcataaactattttgcataagctctaaaata 43577201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 578 - 749
Target Start/End: Original strand, 5203368 - 5203539
Alignment:
Q  578 ttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaaccta 677  Q
    ||||||||||||||||| | || ||||||| ||| ||| |||||||||||  ||||  |||| || | | ||||||||||||  ||||  ||| || |||    
T  5203368 ttatgaaaaatagtttacgtaaataaataagcttttattttaatttataagctctctctaacaaaatttgtatcttcataaatgattttctcataaacta 5203467  T
Q  678 ctttgataaatttaaaaataatacattaat-cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    | || | ||||||| ||||||||||| ||| |||||||||||||||| |||||||| ||||||||| ||||||    
T  5203468 ccttaa-aaatttataaataatacataaatacttatttatttgcataagctgttttatataagctctaaaata 5203539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 552 - 639
Target Start/End: Complemental strand, 6125464 - 6125377
Alignment:
Q  552 ctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaac 639  Q
    ||||| ||||||||||  ||| || |||||||||||||| |||||||| ||||||| ||| |||||||||| ||||||||||| ||||    
T  6125464 ctgtttggattgacttctttttgaacttatgaaaaatagcttatgcaaataaataagcttttatattaattcataatttctcactaac 6125377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 548 - 642
Target Start/End: Complemental strand, 35537026 - 35536933
Alignment:
Q  548 gggtctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    ||||| ||| ||||||||||| ||| ||| ||||||||||||| |||||||| ||||||| ||| |||||| ||| |||| ||||||||||||||    
T  35537026 gggtccgtttggattgacttatttttgagattatgaaaaatagcttatgcaaataaataagcttttatatt-attcataagttctcagtaacgaa 35536933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 548 - 642
Target Start/End: Original strand, 41059693 - 41059787
Alignment:
Q  548 gggtctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    ||||||||| |||| | |||| ||| |||||||||||||| ||||||||||| ||||||| ||| ||| |||||| |||| |||||| |||||||    
T  41059693 gggtctgtttggatgggcttatttttgagcttatgaaaaacagtttatgcaaataaataagcttttatgttaattcataagttctcactaacgaa 41059787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 675 - 749
Target Start/End: Complemental strand, 17128333 - 17128258
Alignment:
Q  675 ctactttgataaatttaaaaataatacattaat-cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||||||||||| ||||  |||||||||| ||  |||||||||||||||| ||||||||| |||||||||||||||    
T  17128333 ctactttgataagtttatgaataatacataaaagcttatttatttgcataagctgttttgcataagctcaaaaata 17128258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 642
Target Start/End: Original strand, 13625456 - 13625518
Alignment:
Q  580 atgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||||||| || ||| |||||||    
T  13625456 atgaaaaatagcttatgcaaataaataaacttttatattaatttataagttttcactaacgaa 13625518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 574 - 723
Target Start/End: Complemental strand, 16722182 - 16722033
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    ||||||||||||||||| ||||| || ||||| ||||| ||| |||||||||||  ||||| |||||||   | |||||||||||||  ||| |||  ||    
T  16722182 gagcttatgaaaaatagcttatgtaaataaatcaacttttatcttaatttataaactctcactaacgaaaagtgtatcttcataaacggtttcttcgtaa 16722083  T
Q  674 cctactttgataaatttaaaaataatacat-taatcttatttatttgcata 723  Q
     |||| || | ||||||| |||||||||||  || ||||||||||||||||    
T  16722082 actacctt-aaaaatttataaataatacataaaaacttatttatttgcata 16722033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 642
Target Start/End: Complemental strand, 9477492 - 9477424
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    |||||||||||||| ||||||||||| |||||||  || ||| |||||| |||| ||||||||||||||    
T  9477492 gagcttatgaaaaagagtttatgcaaataaataagtttttatcttaattcataagttctcagtaacgaa 9477424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 694 - 749
Target Start/End: Complemental strand, 15414028 - 15413972
Alignment:
Q  694 aataatacattaat-cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||||    
T  15414028 aataatacattaatacttatttatttgcataagctgttttgcataagctctaaaata 15413972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 749
Target Start/End: Complemental strand, 26003153 - 26002977
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    ||||||||||||||||  ||||| || |||||||  || ||| |||||||| ||  ||||| |||||||   | ||||||||||||| | || |||| ||    
T  26003153 gagcttatgaaaaataacttatgtaaataaataagtttttattttaatttacaagctctcactaacgaaaattgtatcttcataaaccactttttcataa 26003054  T
Q  674 cctactttgataaatttaaaaataatacattaat-cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
      ||  || | ||| ||| ||||||||||| ||  ||||||||||||||||  ||||||||||||||||| ||||||    
T  26003053 aataacttaacaaacttataaataatacataaaaacttatttatttgcataaactgttttgtataagctctaaaata 26002977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 642
Target Start/End: Original strand, 29418682 - 29418750
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    |||||||||||||| ||||||||||| |||||||  || ||| ||||||||||| |||||| |||||||    
T  29418682 gagcttatgaaaaaaagtttatgcaaataaataagtttttatcttaatttataaattctcactaacgaa 29418750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 574 - 633
Target Start/End: Complemental strand, 6144894 - 6144835
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctc 633  Q
    |||||||||||||||||||||||||| |||| || ||| |||||||||| |||| |||||    
T  6144894 gagcttatgaaaaatagtttatgcaaataaacaagcttttatattaattcataagttctc 6144835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 548 - 627
Target Start/End: Complemental strand, 40697188 - 40697109
Alignment:
Q  548 gggtctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataa 627  Q
    ||||||||| |||||| |||| ||| ||||||||||||||||| |||| ||| ||||||| ||| ||| |||||| ||||    
T  40697188 gggtctgtttggattggcttatttttgagcttatgaaaaatagcttatacaaataaataagcttttatgttaattcataa 40697109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 565 - 642
Target Start/End: Original strand, 2577349 - 2577426
Alignment:
Q  565 cttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    |||| ||| ||||||||||||||||| |||||||| |||||||| |  ||| |||||| |||| |||||| |||||||    
T  2577349 cttatttttgagcttatgaaaaatagcttatgcaaataaataaattgttatgttaattcataagttctcactaacgaa 2577426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 658
Target Start/End: Original strand, 40452391 - 40452492
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaatta-tatatcttcat 656  Q
    |||||| |||| ||| ||||||||||||||||| |||||||| ||||||| ||  ||| || ||| |||| |||||| |||||||  | |||||||||||    
T  40452391 ggattggcttatttttgagcttatgaaaaatagcttatgcaaataaataagctattatgtttattcataagttctcactaacgaaaaattatatcttcat 40452490  T
Q  657 aa 658  Q
    ||    
T  40452491 aa 40452492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 627
Target Start/End: Original strand, 29922104 - 29922172
Alignment:
Q  559 gattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataa 627  Q
    ||||| |||| ||| ||| ||||||||||||| |||||||| ||||||| ||| |||||||||| ||||    
T  29922104 gattggcttatttttgagtttatgaaaaatagcttatgcaaataaataagcttttatattaattcataa 29922172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 642
Target Start/End: Original strand, 15167645 - 15167712
Alignment:
Q  575 agcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    |||||||||||||||||||||| || ||||| | ||| ||| |||||| |||| |||||| |||||||    
T  15167645 agcttatgaaaaatagtttatgtaaataaattagcttttatgttaattcataaattctcattaacgaa 15167712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 607
Target Start/End: Original strand, 15413953 - 15414012
Alignment:
Q  548 gggtctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataa 607  Q
    ||||||||| ||||||||||| ||| ||||||||| |||| || |||||||| |||||||    
T  15413953 gggtctgtttggattgacttattttagagcttatgcaaaacagcttatgcaaataaataa 15414012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 749
Target Start/End: Complemental strand, 24030369 - 24030195
Alignment:
Q  575 agcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaac 674  Q
    ||||||| |||||||| |||||||| ||||||| ||| ||| |||||| |||| |||||| |||||||   | |||| ||  ||    ||| |||| ||     
T  24030369 agcttattaaaaatagcttatgcaaataaataagcttttatgttaattcataagttctcactaacgaaaattgtatcctcgcaagtgtttt-ttcataaa 24030271  T
Q  675 ctactttgataaatttaaaaataatacattaat-cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    ||||||||| ||  |||  |||||||||| ||  |||||||||||| ||| ||||||||||||||||| |||||||    
T  24030270 ctactttgacaagcttatgaataatacataaaagcttatttatttggataagctgttttgtataagcttaaaaata 24030195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 501
Target Start/End: Original strand, 31677101 - 31677148
Alignment:
Q  454 ttgagcttatagcttataagatcatgcgacaaaaaagacctgtttgat 501  Q
    |||||||||||||||||||| | ||  |||||||||||||||||||||    
T  31677101 ttgagcttatagcttataagctaatttgacaaaaaagacctgtttgat 31677148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 558 - 660
Target Start/End: Complemental strand, 2670231 - 2670130
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcata 657  Q
    ||||||| ||| |||| |||||||||||| || ||||||||| |||||||| || ||| || ||| |||| |||||| |||||||   ||||| ||||||    
T  2670231 ggattgatttattttcaagcttatgaaaagtaatttatgcaaataaataaatttttatgtt-attcataaattctcactaacgaaaattatattttcata 2670133  T
Q  658 aac 660  Q
    |||    
T  2670132 aac 2670130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 548 - 658
Target Start/End: Original strand, 5559823 - 5559933
Alignment:
Q  548 gggtctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattata 647  Q
    ||||| || ||||||| |||| ||| |||||  |||||||||| |||||||| ||||||| ||| ||| | |||| |||| |||||| |||||||   |     
T  5559823 gggtccgtaaggattggcttatttttgagctcgtgaaaaatagcttatgcaaataaataagcttttatgtaaattcataaattctcactaacgaaaattg 5559922  T
Q  648 tatcttcataa 658  Q
    |||||||||||    
T  5559923 tatcttcataa 5559933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 558 - 627
Target Start/End: Complemental strand, 27806088 - 27806018
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaa-tagtttatgcaactaaataaacttatatattaatttataa 627  Q
    |||||| ||||||||  ||||||| ||||| ||| |||||||| ||||||||||| ||| |||||||||||    
T  27806088 ggattggcttactttttagcttattaaaaaatagcttatgcaaataaataaacttttatgttaatttataa 27806018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 749
Target Start/End: Original strand, 589275 - 589316
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||||||||||||||| ||| |||| ||||||||||||||||    
T  589275 cttatttatttgcataagctattttttataagctcaaaaata 589316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 1869013 - 1868972
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaa 599  Q
    |||||| |||| ||||||||||||||||||||| ||||||||    
T  1869013 ggattggcttattttcgagcttatgaaaaatagcttatgcaa 1868972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 749
Target Start/End: Complemental strand, 4728867 - 4728826
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||||||||||||||| |||||||| ||||||||| ||||||    
T  4728867 cttatttatttgcataagctgttttatataagctctaaaata 4728826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 749
Target Start/End: Original strand, 6025989 - 6026090
Alignment:
Q  648 tatcttcataaacaatttgttcagaacctactttgataaatttaaaaataatacattaatcttatttatttgcatatgctgttttgtataagctcaaaaa 747  Q
    |||||| ||||||  ||| |||| || |||| || | ||| ||| ||||||||||| || | ||||||||||||||  || |||||||||||||| ||||    
T  6025989 tatctttataaaccgttttttcataaactacgttaacaaaattataaataatacataaaacatatttatttgcataaactattttgtataagctctaaaa 6026088  T
Q  748 ta 749  Q
    ||    
T  6026089 ta 6026090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 749
Target Start/End: Complemental strand, 13739297 - 13739256
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    ||||||||| |||||| ||||||||| |||||||||||||||    
T  13739297 cttatttatatgcataagctgttttgaataagctcaaaaata 13739256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 749
Target Start/End: Original strand, 22202001 - 22202042
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    ||||||||||| |||| ||||||||| |||||||||||||||    
T  22202001 cttatttatttacataagctgttttgcataagctcaaaaata 22202042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 749
Target Start/End: Original strand, 29922254 - 29922295
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    ||||||||||||||||  |||||||| |||||||||||||||    
T  29922254 cttatttatttgcataaactgttttgcataagctcaaaaata 29922295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 749
Target Start/End: Original strand, 33667457 - 33667498
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||||||||||||||| |||||||| ||||||||| ||||||    
T  33667457 cttatttatttgcataagctgttttatataagctctaaaata 33667498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 749
Target Start/End: Complemental strand, 33757109 - 33757068
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||||||||||||||| |||||||| ||||||||| ||||||    
T  33757109 cttatttatttgcataagctgttttatataagctctaaaata 33757068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 642
Target Start/End: Complemental strand, 42852174 - 42852109
Alignment:
Q  577 cttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    |||||| |||| || |||||||||||||||| ||| ||| |||||| |||| |||||| |||||||    
T  42852174 cttatgcaaaacagcttatgcaactaaataagcttttatgttaattcataagttctcactaacgaa 42852109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 574 - 749
Target Start/End: Complemental strand, 29614349 - 29614174
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    ||||||||||||||||| ||||| || |||||||  |||||| |||||||||||  ||||| |||||||   | |||||||||||||  ||| |||| ||    
T  29614349 gagcttatgaaaaatagcttatgtaaataaataagtttatattttaatttataagctctcactaacgaaaattgtatcttcataaactgttttttcataa 29614250  T
Q  674 cctactttgataaatttaaaaataatacat-taatcttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
     |||| || | ||| ||| |||||||||||  || ||||||||||| |||| |||||||| ||||||||| ||||||    
T  29614249 actacctt-aaaaaattataaataatacataaaaacttatttatttacataagctgttttatataagctctaaaata 29614174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 574 - 749
Target Start/End: Complemental strand, 3645458 - 3645283
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    ||||||||||||||||| ||||| || |||||||  |||||| |||||||||||  ||||| |||||||   | ||||||||| |||  ||| |||| ||    
T  3645458 gagcttatgaaaaatagcttatgtaaataaataagtttatattttaatttataagctctcactaacgaaaattgtatcttcatgaactgttttttcataa 3645359  T
Q  674 cctactttgataaatttaaaaataatacat-taatcttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
     |||| || | ||| ||| |||||||||||  || ||||||||||| |||| |||||||| ||||||||| ||||||    
T  3645358 actacctt-aaaaaattataaataatacataaaaacttatttatttacataagctgttttatataagctctaaaata 3645283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 574 - 749
Target Start/End: Complemental strand, 20894658 - 20894483
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    |||||||| |||||||||||||| || |||||||  |||||| |||||||||||  ||||| |||||||   | ||||||||| |||  ||| |||| ||    
T  20894658 gagcttataaaaaatagtttatgtaaataaataagtttatattttaatttataagctctcactaacgaaaattgtatcttcatgaactgttttttcaaaa 20894559  T
Q  674 cctactttgataaatttaaaaataatacat-taatcttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
     |||| || | ||| ||| |||||||||||  || ||||||||||| |||| |||||||| ||||||||| ||||||    
T  20894558 actacatt-aaaaaattataaataatacataaaaacttatttatttacataagctgttttatataagctctaaaata 20894483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 574 - 642
Target Start/End: Complemental strand, 31787678 - 31787610
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    |||||||||||||||||||||||||| ||||||||| | |||||||||| |||| |||||  |||||||    
T  31787678 gagcttatgaaaaatagtttatgcaaataaataaacgtttatattaattcataagttctctttaacgaa 31787610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 574 - 660
Target Start/End: Original strand, 17752061 - 17752147
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaac 660  Q
    ||||||||||||||||| ||||| || ||||||||||| ||| ||||||||||| |||| | |||||||   | |||||||||||||    
T  17752061 gagcttatgaaaaatagcttatgtaaataaataaacttttatgttaatttataagttcttactaacgaaaattgtatcttcataaac 17752147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 574 - 660
Target Start/End: Original strand, 19053381 - 19053467
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaac 660  Q
    ||||||||||||||||| ||||| || ||||||||||| ||| ||||||||||| |||| | |||||||   | |||||||||||||    
T  19053381 gagcttatgaaaaatagcttatgtaaataaataaacttttatgttaatttataagttcttactaacgaaaattgtatcttcataaac 19053467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 642
Target Start/End: Original strand, 33946480 - 33946548
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    ||||||||||||||||| |||||||| ||||| | ||| |||||||||| |||| |||||| |||||||    
T  33946480 gagcttatgaaaaatagcttatgcaaataaatgagcttttatattaattcataagttctcattaacgaa 33946548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 658
Target Start/End: Original strand, 40240492 - 40240591
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcata 657  Q
    ||||||||||| ||| ||||||||||||||||| |||||||| ||||||| ||| ||| |||||| ||||  ||||| |||||||   | ||||||||||    
T  40240492 ggattgacttatttt-gagcttatgaaaaatagcttatgcaaataaataagcttttatcttaattcataagctctcactaacgaaaattgtatcttcata 40240590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 584 - 627
Target Start/End: Complemental strand, 51345607 - 51345564
Alignment:
Q  584 aaaatagtttatgcaactaaataaacttatatattaatttataa 627  Q
    |||||||||||||||| ||||||||||| |||||||||||||||    
T  51345607 aaaatagtttatgcaaataaataaacttttatattaatttataa 51345564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 564 - 630
Target Start/End: Original strand, 32983211 - 32983277
Alignment:
Q  564 acttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataattt 630  Q
    ||||| ||| |||||||| |||||||| |||||||| |||||||| || ||| ||||||||||||||    
T  32983211 acttatttttgagcttataaaaaatagcttatgcaaataaataaatttttatgttaatttataattt 32983277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 607
Target Start/End: Original strand, 53261681 - 53261730
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataa 607  Q
    ||||||||||| ||| ||||||||||||||||| |||||||| |||||||    
T  53261681 ggattgacttagttttgagcttatgaaaaatagcttatgcaattaaataa 53261730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 658
Target Start/End: Original strand, 43079848 - 43079948
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcata 657  Q
    ||||||||||| || |||||||||||||||||| |||| ||| ||||||| ||| ||  |||||| |||| |||||| | |||||   | ||||||||||    
T  43079848 ggattgacttatttacgagcttatgaaaaatagcttattcaaataaataagcttttaagttaattcataagttctcaatcacgaaaattgtatcttcata 43079947  T
Q  658 a 658  Q
    |    
T  43079948 a 43079948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 642
Target Start/End: Original strand, 52895335 - 52895403
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    ||||||||||||||| ||||| |||| ||||||| ||| ||| |||||| |||| |||||| |||||||    
T  52895335 gagcttatgaaaaattgtttaggcaaataaataagcttttatgttaattcataaattctcactaacgaa 52895403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 749
Target Start/End: Complemental strand, 4974353 - 4974291
Alignment:
Q  688 tttaaaaataatacattaat-cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||| ||||||||||||| | |||||||||||||||| |||| |||| |||||||| ||||||    
T  4974353 tttataaataatacattagtgcttatttatttgcataagctgctttgcataagctctaaaata 4974291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 554 - 632
Target Start/End: Complemental strand, 10272295 - 10272218
Alignment:
Q  554 gttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttct 632  Q
    |||||||||| |||| |||  ||||||||||||||| || ||||||  |||||||||||||| |||||| |||| ||||    
T  10272295 gttaggattgccttattttttagcttatgaaaaatactt-atgcaaaaaaataaacttatatgttaattcataagttct 10272218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 708 - 746
Target Start/End: Complemental strand, 25341303 - 25341265
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaa 746  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  25341303 cttatttatttgcatatgctgttttacataagctcaaaa 25341265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 627
Target Start/End: Original strand, 3876193 - 3876246
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataa 627  Q
    ||||||||||||||||| |||||||| |||||||  || |||||||||| ||||    
T  3876193 gagcttatgaaaaatagcttatgcaaataaataagtttttatattaattcataa 3876246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 749
Target Start/End: Complemental strand, 20685792 - 20685751
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    ||||||||||||| || ||||||||| |||||||||||||||    
T  20685792 cttatttatttgcgtaagctgttttgcataagctcaaaaata 20685751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 749
Target Start/End: Original strand, 22809259 - 22809300
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||||||||||||||| ||||||||| |||| ||||||||||    
T  22809259 cttatttatttgcataagctgttttgcataacctcaaaaata 22809300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 749
Target Start/End: Complemental strand, 23555505 - 23555464
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    ||||||||||||||||  |||||| |||||||||||||||||    
T  23555505 cttatttatttgcataaactgtttcgtataagctcaaaaata 23555464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 749
Target Start/End: Original strand, 29830835 - 29830876
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    ||||||||||||||||  ||||||||||||||||| ||||||    
T  29830835 cttatttatttgcataaactgttttgtataagctctaaaata 29830876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 627
Target Start/End: Complemental strand, 36266387 - 36266334
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataa 627  Q
    |||||||||||||||| ||||||||| |||||||  || ||| |||||||||||    
T  36266387 gagcttatgaaaaataatttatgcaaataaataagtttttattttaatttataa 36266334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 627
Target Start/End: Complemental strand, 43376851 - 43376798
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataa 627  Q
    |||||||||||||| || ||||||||||||||||  || |||||||||| ||||    
T  43376851 gagcttatgaaaaagagcttatgcaactaaataagtttttatattaattcataa 43376798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 552 - 632
Target Start/End: Original strand, 29390459 - 29390539
Alignment:
Q  552 ctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttct 632  Q
    ||||| ||||||||||| ||| |||||||||||||||||||||||||| ||||||| ||| ||| |||||| |||| ||||    
T  29390459 ctgtttggattgacttatttttgagcttatgaaaaatagtttatgcaaataaataagcttttatgttaattcataaattct 29390539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 574 - 749
Target Start/End: Complemental strand, 44799558 - 44799384
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    ||||||||||||||||||||||| || |||||||  || ||| |||||||||||  ||||| ||||||||  | ||||||||||||| |||| |||| ||    
T  44799558 gagcttatgaaaaatagtttatgtaaataaataagtttttattttaatttataagctctcactaacgaatattctatcttcataaactattttttcaaaa 44799459  T
Q  674 cctactttgataaatttaaaaataatacattaatcttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
     |||| || | ||| ||| ||||||||    || ||||||||||||||||  || |||| |||||| || ||||||    
T  44799458 actacctt-aaaaacttataaataataataaaaacttatttatttgcataaactattttatataagttctaaaata 44799384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 575 - 659
Target Start/End: Original strand, 14691230 - 14691314
Alignment:
Q  575 agcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaa 659  Q
    |||||||||||||||||| |||||| ||||||| ||| ||| |||||| |||| |||||| |||||||   ||||||||||||||    
T  14691230 agcttatgaaaaatagttcatgcaaataaataaccttttatgttaattcataagttctcactaacgaaaattatatcttcataaa 14691314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 558 - 723
Target Start/End: Complemental strand, 29378817 - 29378651
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcata 657  Q
    ||||||||||| ||| ||| ||||||||||||| |||||||| ||||||| ||| ||  |||||| |||| |||| | |||||||   | ||||||||||    
T  29378817 ggattgacttatttttgagtttatgaaaaatagcttatgcaaataaataagcttttacgttaattcataagttcttactaacgaaaattgtatcttcata 29378718  T
Q  658 aacaatttgttcagaacctactttgataaatttaaaaataatacat-taatcttatttatttgcata 723  Q
    | |  ||| |||| || |||| |||| ||| | | |||||||||||  || ||||||||||||||||    
T  29378717 agctgttttttcataaactaccttgacaaactcataaataatacataaaagcttatttatttgcata 29378651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 708 - 749
Target Start/End: Complemental strand, 18837243 - 18837202
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  18837243 cttatttatttgcatatgctgttttgcataagctcaaaaata 18837202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 749
Target Start/End: Complemental strand, 28004738 - 28004564
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    |||||||| |||||||| |||||||| ||||||| ||| ||| |||||||||||  |||   | ||||| | | ||||||||||||   ||| |||| ||    
T  28004738 gagcttat-aaaaatagcttatgcaaataaataagcttttattttaatttataagctcttgctgacgaaatttgtatcttcataaatggttttttcataa 28004640  T
Q  674 cctactttgataaatttaaaaataatacattaat-cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
     ||||||  | ||||| | ||||||||||| ||  |||||||||||||||| |||||||| ||||||||| ||||||    
T  28004639 actacttaaaaaaatt-ataaataatacataaaaacttatttatttgcataagctgttttatataagctctaaaata 28004564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 574 - 748
Target Start/End: Complemental strand, 991655 - 991481
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    ||||||||||||||||| ||||| || ||||||| ||| ||| |||||||||||  ||||| |||||||   | ||||||||||||   ||| |||| ||    
T  991655 gagcttatgaaaaatagcttatgtaaataaataagcttttattttaatttataaactctcactaacgaaaagtgtatcttcataaatggttttttcataa 991556  T
Q  674 cctactttgataaatttaaaaataatacat-taatcttatttatttgcatatgctgttttgtataagctcaaaaat 748  Q
     |||| || | ||| ||| ||||||| |||  || ||||||||| |||||| | |||||| ||||||||| |||||    
T  991555 actacctt-aaaaacttataaataatgcataaaaacttatttatgtgcataaggtgttttttataagctctaaaat 991481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 565 - 632
Target Start/End: Complemental strand, 1401238 - 1401171
Alignment:
Q  565 cttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttct 632  Q
    |||||||| ||||||||||||||||||| |||||| ||||||| ||| ||| |||||| |||| ||||    
T  1401238 cttacttttgagcttatgaaaaatagttcatgcaaataaataagcttttatgttaattcataagttct 1401171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 632
Target Start/End: Original strand, 44613403 - 44613461
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttct 632  Q
    ||||||||||||||||| |||||||| ||||||| ||| |||||||||| |||| ||||    
T  44613403 gagcttatgaaaaatagcttatgcaaataaataagcttttatattaattcataagttct 44613461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 574 - 627
Target Start/End: Complemental strand, 1312269 - 1312216
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataa 627  Q
    ||||||||||||||||| ||||| || ||||||||||| ||| |||||||||||    
T  1312269 gagcttatgaaaaatagcttatgtaaataaataaacttttattttaatttataa 1312216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 749
Target Start/End: Original strand, 24371455 - 24371512
Alignment:
Q  693 aaataatacattaat-cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    ||||||||||||||  |||||||||||||||| |||||||| ||||||||| ||||||    
T  24371455 aaataatacattaaaacttatttatttgcataagctgttttatataagctctaaaata 24371512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 641
Target Start/End: Complemental strand, 33205016 - 33204923
Alignment:
Q  548 gggtctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacga 641  Q
    ||||| ||| |||||| |||| |||  |||||||||||||||  |||||||| ||||||| ||| ||| |||||| |||| |||||| ||||||    
T  33205016 gggtccgtttggattggcttattttttagcttatgaaaaatatcttatgcaaataaataagcttttatgttaattcataagttctcactaacga 33204923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 749
Target Start/End: Complemental strand, 35809127 - 35809070
Alignment:
Q  693 aaataatacattaat-cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    ||||||||||||||| |||||||||||||||| | || ||||||||||||| ||||||    
T  35809127 aaataatacattaatgcttatttatttgcataagatgctttgtataagctctaaaata 35809070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 572 - 633
Target Start/End: Original strand, 37465814 - 37465875
Alignment:
Q  572 tcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctc 633  Q
    ||||||||||||||| ||| |||||||| ||||||| ||| |||||||||| |||| |||||    
T  37465814 tcgagcttatgaaaattagcttatgcaaataaataagcttttatattaattcataagttctc 37465875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 708 - 749
Target Start/End: Complemental strand, 38372579 - 38372538
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||||||||||||||| ||||||||| |||||||||||||||    
T  38372579 cttatttatttgcataagctgttttgcataagctcaaaaata 38372538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 642
Target Start/End: Complemental strand, 22032918 - 22032850
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    |||||||||||||| || |||||||| |||||||  || ||| ||||||||||| |||||| |||||||    
T  22032918 gagcttatgaaaaaaagcttatgcaaataaataagtttttatcttaatttataagttctcactaacgaa 22032850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 639
Target Start/End: Complemental strand, 32358787 - 32358700
Alignment:
Q  552 ctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaac 639  Q
    ||||| |||||||| || |||  ||||||  ||||||| ||||||||| ||||||| ||| ||| ||||||||||| |||||| ||||    
T  32358787 ctgtttggattgacatattttttagcttacaaaaaataatttatgcaagtaaataagcttttatgttaatttataagttctcactaac 32358700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 749
Target Start/End: Original strand, 40629467 - 40629522
Alignment:
Q  694 aataatacattaatcttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||||||||| ||  ||||||||||| ||| ||||||||| |||||||||||||||    
T  40629467 aataatacataaagtttatttatttggataagctgttttgcataagctcaaaaata 40629522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 627
Target Start/End: Original strand, 44834903 - 44834966
Alignment:
Q  564 acttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataa 627  Q
    ||||| |||||| |||||||||||||  |||||||| |||||||||||  || |||||||||||    
T  44834903 acttattttcgaacttatgaaaaataacttatgcaaataaataaactttaatgttaatttataa 44834966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 584 - 622
Target Start/End: Original strand, 7097085 - 7097123
Alignment:
Q  584 aaaatagtttatgcaactaaataaacttatatattaatt 622  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  7097085 aaaatagtttatgcaaataaataaacttttatattaatt 7097123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 708 - 746
Target Start/End: Original strand, 37779343 - 37779381
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaa 746  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  37779343 cttatttatttgcataagctgttttgtataagctaaaaa 37779381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 580 - 642
Target Start/End: Complemental strand, 47648687 - 47648625
Alignment:
Q  580 atgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    |||||||||||||||||||| |||||| | || |||||||||| |||| || ||| |||||||    
T  47648687 atgaaaaatagtttatgcaaataaatatatttttatattaattcataagttttcactaacgaa 47648625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 607
Target Start/End: Complemental strand, 10383619 - 10383586
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataa 607  Q
    |||||||||||||||||||||||||| |||||||    
T  10383619 gagcttatgaaaaatagtttatgcaaataaataa 10383586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 749
Target Start/End: Original strand, 34923055 - 34923096
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||||||||||||||| ||| |||| ||||||||||||||||    
T  34923055 cttatttatttgcataagctattttttataagctcaaaaata 34923096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 544 - 642
Target Start/End: Original strand, 12816801 - 12816900
Alignment:
Q  544 ttttgggtctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaattta-taatttctcagtaacgaa 642  Q
    ||||||| ||||| ||||| ||||| ||| |||||||||||||||||||||||||| ||||||| ||| ||| |||||| | ||| |||||| |||||||    
T  12816801 ttttgggcctgtttggattaacttatttttgagcttatgaaaaatagtttatgcaaataaataagcttttatgttaattcattaagttctcactaacgaa 12816900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 558 - 642
Target Start/End: Original strand, 10755197 - 10755281
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    ||||||||||| ||| |||||| ||||||||||||||||||| ||||||| ||| ||| |||||| |||| |||| | |||||||    
T  10755197 ggattgacttatttttgagcttctgaaaaatagtttatgcaaataaataagcttttatgttaattcataagttcttactaacgaa 10755281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 634
Target Start/End: Complemental strand, 23239403 - 23239343
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctca 634  Q
    ||||||||||||||||| |||||||| ||||||| ||| |||||||||| |||| ||||||    
T  23239403 gagcttatgaaaaatagcttatgcaaataaataagcttttatattaattcataagttctca 23239343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 741
Target Start/End: Original strand, 32615345 - 32615512
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    ||||||||||||||||  ||||| || ||| ||| ||| ||| ||||||||||   ||||| |||||||   | |||||||||||| | ||| ||||  |    
T  32615345 gagcttatgaaaaataacttatgtaaataagtaagcttttattttaatttatatgctctcactaacgaaaattgtatcttcataaatagttttttcatca 32615444  T
Q  674 cctactttgataaatttaaaaataatacattaat-cttatttatttgcatatgctgttttgtataagct 741  Q
     |||| || | ||||||| ||||||||||| ||  |||||||||||||||| |||||||| ||||||||    
T  32615445 actaccttaa-aaatttataaataatacataaaaacttatttatttgcataagctgttttatataagct 32615512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 560 - 627
Target Start/End: Original strand, 9764307 - 9764374
Alignment:
Q  560 attgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataa 627  Q
    ||||||||| ||| || ||||||||||||| ||||||||| ||||||| ||| ||| |||||||||||    
T  9764307 attgacttatttttgaacttatgaaaaataatttatgcaaataaataagcttttatgttaatttataa 9764374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 723
Target Start/End: Original strand, 32165191 - 32165340
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    ||||||||||||||||| ||||| || |||||||  || ||| |||||||||||  ||||| |||||||   | |||||||||||||  ||| |||| ||    
T  32165191 gagcttatgaaaaatagcttatgtaaataaataagtttttattttaatttataagctctcactaacgaaaattgtatcttcataaactgttttttcataa 32165290  T
Q  674 cctactttgataaatttaaaaataatacat-taatcttatttatttgcata 723  Q
     ||||||| | ||| ||| |||||||||||  || ||||||||||| ||||    
T  32165291 actacttt-aaaaaattataaataatacataaaaacttatttattttcata 32165340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 634
Target Start/End: Original strand, 35071336 - 35071418
Alignment:
Q  552 ctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctca 634  Q
    ||||| |||||| |||| |||  |||||||||||||||| |||||||| ||||||| ||| ||| |||||| |||| ||||||    
T  35071336 ctgtttggattggcttattttttagcttatgaaaaatagcttatgcaaataaataagcttttatgttaattcataagttctca 35071418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 574 - 627
Target Start/End: Complemental strand, 6752968 - 6752915
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataa 627  Q
    ||||||||||||||||| |||||||| ||||||| ||| |||||||||| ||||    
T  6752968 gagcttatgaaaaatagcttatgcaaataaataagcttttatattaattcataa 6752915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 708 - 749
Target Start/End: Complemental strand, 10687328 - 10687287
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||||||||||||||| ||||||||| |||||||||||||||    
T  10687328 cttatttatttgcataagctgttttgaataagctcaaaaata 10687287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 574 - 670
Target Start/End: Original strand, 715839 - 715937
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaac--ttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttca 670  Q
    ||||||||||||| |||||||| ||| |||||||||  |||||||||| ||||||| || ||| |||| ||   | ||||||||||||| |||| ||||    
T  715839 gagcttatgaaaattagtttatacaaataaataaacttttatatattactttataagttttcactaacaaaaattgtatcttcataaactattttttca 715937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 558 - 632
Target Start/End: Original strand, 2027091 - 2027164
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttct 632  Q
    ||||||||||| |||  |||||||||||||||| |||||||| || |||||||| ||| |||||| |||| ||||    
T  2027091 ggattgacttattttt-agcttatgaaaaatagcttatgcaaatagataaacttttatgttaattcataagttct 2027164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 576 - 662
Target Start/End: Original strand, 17300686 - 17300772
Alignment:
Q  576 gcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaa 662  Q
    ||||||||||||||||||||| || |||||||  || ||| ||||||||||| || ||| |||||||   | ||| |||||||||||    
T  17300686 gcttatgaaaaatagtttatgtaaataaataactttttattttaatttataagttgtcactaacgaaagttgtatattcataaacaa 17300772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 607
Target Start/End: Original strand, 21871198 - 21871247
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataa 607  Q
    ||||||||||| |||  ||||||||||||||||||||| ||| |||||||    
T  21871198 ggattgacttattttttagcttatgaaaaatagtttatacaaataaataa 21871247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 575 - 749
Target Start/End: Complemental strand, 38216174 - 38216003
Alignment:
Q  575 agcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaac 674  Q
    |||||| ||||||||| |||||||| ||||||| ||| ||| |||| | |||| |||||| |||||||   | ||||||||||  | |||| |||  ||     
T  38216174 agcttacgaaaaatagcttatgcaaataaataagcttttatgttaactcataagttctcactaacgaaaattgtatcttcatatgctattttttcctaaa 38216075  T
Q  675 ctactttgataaatttaaaaataatacattaatcttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||| |||| ||  |||  |||||||||| |   ||||||||||||||| ||||||||| |||||||||||||||    
T  38216074 ctaccttgacaagcttatgaataatacataa---ttatttatttgcataagctgttttgcataagctcaaaaata 38216003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 693 - 749
Target Start/End: Original strand, 2757119 - 2757175
Alignment:
Q  693 aaataatacattaatcttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    ||||||||||| || |||||||||||||||| |||||||| ||||||||| ||||||    
T  2757119 aaataatacataaaacttatttatttgcataagctgttttatataagctctaaaata 2757175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 642
Target Start/End: Complemental strand, 8832629 - 8832545
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    ||||||||||| |||  |||||||||||||||| |||||||| ||||||| ||| ||| |||||| |||| || ||| |||||||    
T  8832629 ggattgacttattttttagcttatgaaaaatagcttatgcaaataaataagcttttatgttaattcataagttttcactaacgaa 8832545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 749
Target Start/End: Original strand, 32521976 - 32522151
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    ||||||||| ||||||| ||||| || |||||||  |||||| |||||||||||  ||| | |||||||   | ||||||||| |||  ||| |||| ||    
T  32521976 gagcttatgtaaaatagcttatgtaaataaataagtttatattttaatttataagctcttactaacgaaaattgtatcttcatgaactgttttttcataa 32522075  T
Q  674 cctactttgataaatttaaaaataatacat-taatcttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
     |||| || | ||| ||| |||||||||||  || ||||||||||| |||| |||||||| ||||||||| ||||||    
T  32522076 actacctt-aaaaaattataaataatacataaaaacttatttatttacataagctgttttatataagctctaaaata 32522151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 575 - 749
Target Start/End: Complemental strand, 4027080 - 4026906
Alignment:
Q  575 agcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaac 674  Q
    |||||||||||||||| |||||||| ||||||| ||  ||| |||||| |||| |||||| |||| ||   | ||||||||||| |  ||| |||| ||     
T  4027080 agcttatgaaaaatagcttatgcaaataaataagctattatgttaattcataagttctcactaacaaaaattgtatcttcataagctgttttttcataaa 4026981  T
Q  675 ctactttgataaatttaaaaataatacattaat-cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||| |||| ||  |||  | |||||||| ||  |||||||||||||||| || |||||| |||||||||||||||    
T  4026980 ctaccttgacaagcttatga-taatacataaaagcttatttatttgcataagcagttttgcataagctcaaaaata 4026906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 577 - 749
Target Start/End: Original strand, 27880930 - 27881103
Alignment:
Q  577 cttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaacct 676  Q
    |||||| ||||  |||||||||| |||||||| || ||| |||||| |||| || ||| |||||||   ||||  ||||||||   ||| |||| || ||    
T  27880930 cttatggaaaagggtttatgcaaataaataaatttttatcttaattcataagttttcattaacgaaaagtatactttcataaattgttttttcataagct 27881029  T
Q  677 actttgataaatttaaaaataatacatta-atcttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    || || ||||| ||| ||||||||||| | | | |||||||||||||| ||| ||||| |||||||| ||||||    
T  27881030 accttaataaacttataaataatacataataacatatttatttgcataagctattttgcataagctctaaaata 27881103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 749
Target Start/End: Original strand, 2790137 - 2790177
Alignment:
Q  709 ttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  2790137 ttatttatttgcataagctgttttgcataagctcaaaaata 2790177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 749
Target Start/End: Complemental strand, 4090509 - 4090469
Alignment:
Q  709 ttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  4090509 ttatttatttgcataagctgttttgcataagctcaaaaata 4090469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 658
Target Start/End: Complemental strand, 21788613 - 21788529
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataa 658  Q
    ||||||||||||||||  |||||||| ||||||| ||| |||||||||| ||||  ||||| |||||||   | |||||||||||    
T  21788613 gagcttatgaaaaataacttatgcaaataaataagcttttatattaattcataagctctcactaacgaaaattttatcttcataa 21788529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 749
Target Start/End: Original strand, 22898287 - 22898462
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaacaatttgttcagaa 673  Q
    ||||||||||||||||| ||||| || ||||||| ||| ||| ||||| ||||| || | | |||||||   | ||| ||||||| | |||| |||| ||    
T  22898287 gagcttatgaaaaatagcttatgtaaataaataagcttttattttaatctataagttttgactaacgaaaattgtattttcataacccattttttcataa 22898386  T
Q  674 cctactttgataaatttaaaaataatacattaatct-tatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
     |||| || | ||||||| ||||||||||| ||  | |||||||||||||| | | |||| ||||||||| ||||||    
T  22898387 actacctt-aaaaatttataaataatacataaaaatgtatttatttgcataagttattttatataagctctaaaata 22898462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 642
Target Start/End: Complemental strand, 29774917 - 29774833
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaa 642  Q
    ||||||||||| ||| ||||| | ||||||||||||| |||| ||||||| ||| ||  |||||| |||| |||||| |||||||    
T  29774917 ggattgacttatttttgagctaacgaaaaatagtttaagcaaataaataagcttttacgttaattcataagttctcactaacgaa 29774833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 630
Target Start/End: Complemental strand, 37420078 - 37420006
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataattt 630  Q
    |||||| |||| |||  ||||||||||||||| ||||||||| ||||||| ||| ||| |||||| |||||||    
T  37420078 ggattggcttattttttagcttatgaaaaataatttatgcaaataaataagcttttatgttaattcataattt 37420006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 607
Target Start/End: Complemental strand, 4533504 - 4533445
Alignment:
Q  548 gggtctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataa 607  Q
    ||||| ||| ||||| ||||| ||| ||||||||||||||||| |||||||| |||||||    
T  4533504 gggtccgtttggattaacttatttttgagcttatgaaaaatagcttatgcaaataaataa 4533445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 708 - 747
Target Start/End: Original strand, 27703523 - 27703562
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaa 747  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  27703523 cttatttatttgcataagctgttttgcataagctcaaaaa 27703562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 659
Target Start/End: Complemental strand, 446583 - 446498
Alignment:
Q  574 gagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataaa 659  Q
    |||||||||||||||| |||||| || ||| ||| ||| ||| |||||||||||  ||||| |||||||   | ||||||||||||    
T  446583 gagcttatgaaaaataatttatgtaaataagtaagcttttattttaatttataagctctcactaacgaaaattgtatcttcataaa 446498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 746
Target Start/End: Original strand, 9140795 - 9140832
Alignment:
Q  709 ttatttatttgcatatgctgttttgtataagctcaaaa 746  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  9140795 ttatttatttgcatacgatgttttgtataagctcaaaa 9140832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 560 - 609
Target Start/End: Original strand, 17797149 - 17797198
Alignment:
Q  560 attgacttactttcgagcttatgaaaaatagtttatgcaactaaataaac 609  Q
    |||||||||||||  ||||| ||||||||| ||||||||| |||||||||    
T  17797149 attgacttacttttcagcttgtgaaaaataatttatgcaaataaataaac 17797198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 749
Target Start/End: Complemental strand, 40301373 - 40301332
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||||||||||||||| |||||||| ||||||||| ||||||    
T  40301373 cttatttatttgcataagctgttttttataagctctaaaata 40301332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 43787746 - 43787787
Alignment:
Q  558 ggattgacttactttcgagcttatgaaaaatagtttatgcaa 599  Q
    ||||||||||| |||  |||||||||||||||||||||||||    
T  43787746 ggattgacttattttttagcttatgaaaaatagtttatgcaa 43787787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 708 - 746
Target Start/End: Original strand, 43881 - 43919
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaa 746  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43881 cttatttatttgcatatgctgttttgtataagctcaaaa 43919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 548 - 643
Target Start/End: Complemental strand, 24929 - 24834
Alignment:
Q  548 gggtctgttaggattgacttactttcgagcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaat 643  Q
    ||||| ||| |||||| |||| ||| ||||||||||||| ||| |||||||| |||||||  || ||| ||||||||||| |||||| ||| ||||    
T  24929 gggtccgtttggattgtcttatttttgagcttatgaaaagtagcttatgcaaataaataagtttttatgttaatttataagttctcactaatgaat 24834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1367 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 658
Target Start/End: Complemental strand, 1213 - 1130
Alignment:
Q  575 agcttatgaaaaatagtttatgcaactaaataaacttatatattaatttataatttctcagtaacgaattatatatcttcataa 658  Q
    |||||||||||||||  |||||||| ||||||| ||| ||||||||  ||||| |||||| ||| ||| | | |||||||||||    
T  1213 agcttatgaaaaataacttatgcaaataaataagcttttatattaaagtataagttctcactaatgaaatttgtatcttcataa 1130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1130 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 687 - 749
Target Start/End: Complemental strand, 2291 - 2229
Alignment:
Q  687 atttaaaaataatacattaatcttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    ||||| ||||||||||||||  ||||||||||||||| | |||||| ||||| ||| ||||||    
T  2291 atttataaataatacattaaatttatttatttgcataagttgttttatataaactctaaaata 2229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 749
Target Start/End: Complemental strand, 48592 - 48551
Alignment:
Q  708 cttatttatttgcatatgctgttttgtataagctcaaaaata 749  Q
    |||||||||||||||| ||| ||||||||||||| |||||||    
T  48592 cttatttatttgcataagctattttgtataagctaaaaaata 48551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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