View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18566_low_18 (Length: 250)
Name: NF18566_low_18
Description: NF18566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18566_low_18 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 20818700 - 20818882
Alignment:
| Q |
36 |
gagcctgggccagtgcccggagtcaccggatcatagaaccgcctagggataaagtacaagtagtattcacaccaaccgcaacaaacctatgaaacttagt |
135 |
Q |
| |
|
||||| |||| ||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| || ||| |||||||||||||||||| |
|
|
| T |
20818700 |
gagcccgggcgagtgcccggagtcgccggatcatagaaccgcccagggataaagtacgagtagtattcacaccatccacaataaacctatgaaacttagt |
20818799 |
T |
|
| Q |
136 |
agtcgaggccacccatccaaaaaactagataaaattatatcaaaatacaatcaagaggagaaacataccactcataaaatata |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20818800 |
agtcgaggccacccatccaaaaaactagataaaattatatcaaaatacaatcaagaggagaaacataccacgcataaaatata |
20818882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 250
Target Start/End: Original strand, 52067553 - 52067588
Alignment:
| Q |
215 |
tataggtcaaatatatctaaagatcctttaagtttt |
250 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
52067553 |
tataggtcaaatatatctaaaggtcctttaagtttt |
52067588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 3956697 - 3956747
Alignment:
| Q |
28 |
ttgggccggagcctgggccagtgcccggagtcaccggatcatagaaccgcc |
78 |
Q |
| |
|
||||||||||||| |||| ||||||||| |||||||| |||||||||||| |
|
|
| T |
3956697 |
ttgggccggagcccgggcgagtgcccggggtcaccgggccatagaaccgcc |
3956747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 440656 - 440689
Alignment:
| Q |
217 |
taggtcaaatatatctaaagatcctttaagtttt |
250 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
440656 |
taggtcaaatacatctaaagatcctttaagtttt |
440689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 9382362 - 9382395
Alignment:
| Q |
217 |
taggtcaaatatatctaaagatcctttaagtttt |
250 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
9382362 |
taggtcaaatatatctaaaggtcctttaagtttt |
9382395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 44544644 - 44544612
Alignment:
| Q |
218 |
aggtcaaatatatctaaagatcctttaagtttt |
250 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
44544644 |
aggtcaaatgtatctaaagatcctttaagtttt |
44544612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 14717413 - 14717453
Alignment:
| Q |
210 |
taaaatataggtcaaatatatctaaagatcctttaagtttt |
250 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
14717413 |
taaaatataggtcaaatgcatctaaaggtcctttaagtttt |
14717453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University