View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18566_low_19 (Length: 249)
Name: NF18566_low_19
Description: NF18566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18566_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 40200575 - 40200793
Alignment:
| Q |
13 |
aagaatatatccaaggaatattgtagaattgactttggttaattttgtatgaaacagggcaattgaaaggtcaaattgtttccatagaagtgggggaaaa |
112 |
Q |
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| T |
40200575 |
aagaaaatatccaaggaatattgtagaattgactttggttaattttgtatgaaacagggcaattgaaaggtcaaattgtttccatagaagtgggggaaaa |
40200674 |
T |
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| Q |
113 |
gatccatgtcacatgaacagcaatatttacatgatttcatttggtgcagtacaaattatattctctcaaattccagattttgatcaattatggtggctct |
212 |
Q |
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| T |
40200675 |
gatccatgtcacatgaacagcaatatttacatgatttcatttggtgcagtacaaattatattctctcaaattccagattttgatcaattatggtggctct |
40200774 |
T |
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| Q |
213 |
ccagtttagctgctgttat |
231 |
Q |
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| T |
40200775 |
ccagtttagctgctgttat |
40200793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 40204076 - 40204294
Alignment:
| Q |
13 |
aagaatatatccaaggaatattgtagaattgactttggttaattttgtatgaaacagggcaattgaaaggtcaaattgtttccatagaagtgggggaaaa |
112 |
Q |
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| T |
40204076 |
aagaaaatatccaaggaatatggtagaattgactttggttaattttgtatgaaacagggcaattgaaaggtcaaattgtttccatagaagtggtggaaaa |
40204175 |
T |
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| Q |
113 |
gatccatgtcacatgaacagcaatatttacatgatttcatttggtgcagtacaaattatattctctcaaattccagattttgatcaattatggtggctct |
212 |
Q |
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| T |
40204176 |
gatccatgtcacatgaatagcaatatttacatgatttcatttggtgcagtgcaaattatattctctcaaattccagattttgatcaaatatggtggctct |
40204275 |
T |
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| Q |
213 |
ccagtttagctgctgttat |
231 |
Q |
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| T |
40204276 |
ccagtttagctactgttat |
40204294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 40208208 - 40208427
Alignment:
| Q |
12 |
gaagaatatatccaaggaatattgtagaattgactttggttaattttgtatgaaacagggcaattgaaaggtcaaattgtttccatagaagtgggggaaa |
111 |
Q |
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|||||| |||||||| |||||| ||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40208208 |
gaagaaaatatccaaagaatatggtataattaactttggttaattctgtatgaaacagggcaattgaaaggtcaaattgtttccatagaagtggtggaaa |
40208307 |
T |
|
| Q |
112 |
agatccatgtcacatgaacagcaatatttacatgatttcatttggtgcagtacaaattatattctctcaaattccagattttgatcaattatggtggctc |
211 |
Q |
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| T |
40208308 |
agatccatgtcacatgaaaagcaatatttacatgatttcatttggtgcagtgcaaattatattctctcaaattccagattttgatcaattgtggtggctc |
40208407 |
T |
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| Q |
212 |
tccagtttagctgctgttat |
231 |
Q |
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| T |
40208408 |
tccagtttagctgctgttat |
40208427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 231
Target Start/End: Complemental strand, 10299443 - 10299280
Alignment:
| Q |
68 |
agggcaattgaaaggtcaaattgtttccatagaagtgggggaaaagatccatgtcacatgaacagcaatatttacatgatttcatttggtgcagtacaaa |
167 |
Q |
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||||||||| ||||||| ||||||||||| || ||||| |||||| ||||||| |||||||| | || ||||||||||||||||||||| || | | |
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| T |
10299443 |
agggcaattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaacatttacatgatttcatttggtattgtggaga |
10299344 |
T |
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| Q |
168 |
ttatattctctcaaattccagattttgatcaattatggtggctctccagtttagctgctgttat |
231 |
Q |
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| | |||||||||||||| || |||||||| |||||||||||||| | ||||||||||||| |
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| T |
10299343 |
tctttttctctcaaattcctgactttgatcagttatggtggctctctgctctagctgctgttat |
10299280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 6250143 - 6250177
Alignment:
| Q |
179 |
caaattccagattttgatcaattatggtggctctc |
213 |
Q |
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| T |
6250143 |
caaattccagattttgatcaaatatggtggctctc |
6250177 |
T |
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