View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18566_low_2 (Length: 642)
Name: NF18566_low_2
Description: NF18566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18566_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 21 - 625
Target Start/End: Original strand, 55941081 - 55941688
Alignment:
| Q |
21 |
ctgatatgaaagcactaaaggggaatgctaataaagtagtagtgcatcctaaattaagtaatgtatattatcaactcttactattaggaaaaaagagaag |
120 |
Q |
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| T |
55941081 |
ctgatatgaaagcactaaaggggaatgctaataaagtagtagtgcatcctaaattaagtaatgtatattatcaactcttactattaggaaaaaagagaag |
55941180 |
T |
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| Q |
121 |
cagaggttaagcaaataaataaggactaaagagactttgagaagctttttgagggtgttttacaccttctaatacaaggaatgcgcaatctacaaatgct |
220 |
Q |
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| T |
55941181 |
cagaggttaagcaaataaataaggactaaagagactttgagaagctttttgagggtgttttacaccttctaatacaaggaatgcgcaatctacaaatgct |
55941280 |
T |
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| Q |
221 |
tgaggacctcataacacatgtacagttttcaatagaaactgttcggaaataccatcacaatttctctcatttgtgaaatcaaaataagcactaagc-nnn |
319 |
Q |
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| T |
55941281 |
tgaggacctcataacacatgtacagttttcaatagaaactgttcggaaataccatcacaatttctctcatttgtgaaatcaaaataagcactaagcaaaa |
55941380 |
T |
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| Q |
320 |
nnnnnnnnnnnnnnntaataataagagaagtgagtagaaggataaagaataaaatttccacgtggaaaaccttctcaatgtaaaaggatagaaccacggg |
419 |
Q |
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| T |
55941381 |
acaaacaaaaaataataataataagagaagtgagtagaaggataaagaataaaatttccacgtggaaaaccttctcaatgtaaaaggatagaaccacggg |
55941480 |
T |
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| Q |
420 |
attcaattcagtaaaatatttcgcatatagaaaagtaggattaaaataactctcctgatacaagagtttctctctcaatctcactcaattcggatatgat |
519 |
Q |
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| T |
55941481 |
attcaattcagtaaaatatttcgcatatagaaaagtaggattaaaataactctcctgatacaagagtttctctctcaatctcactcaattcggatatgat |
55941580 |
T |
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| Q |
520 |
ataccatatctctcaactctcacaaatctaagatggatataaaactttcactcaaagaggattgctagaacctctcac--tataactcttggataagatg |
617 |
Q |
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| T |
55941581 |
ataccatatctctcaactctcacaaatctaagatggatataaaactttcactcaaagaggattgctagaacctctcgctatataactcttggataagatg |
55941680 |
T |
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| Q |
618 |
acaaaact |
625 |
Q |
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| T |
55941681 |
acaaaact |
55941688 |
T |
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