View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18566_low_22 (Length: 245)
Name: NF18566_low_22
Description: NF18566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18566_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 7423236 - 7423465
Alignment:
| Q |
1 |
attgacaatgtctttctcttcaacccatctatctcttcctattactttgtctagttcctccgtagctctcttgataatctctggctttttcacaagctcg |
100 |
Q |
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| T |
7423236 |
attgacaatgtctttctcttcaacccatctatctcttcctattactttgtctagttcctccgtagctctcttgataatctctggctttttcacaagctcg |
7423335 |
T |
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| Q |
101 |
gagattgcccattcaactgtaactgtagatgtatctgtcccacctgctattaagtcctacgaaattgatatataacatatgatattggtatagtcttgtt |
200 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7423336 |
gagattgcccattctactgttactgtagatgtatctgtcccacctgctattaagtcctacgaaatagatatataacatatgatattggtatagtcttgtt |
7423435 |
T |
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| Q |
201 |
tagataaataggttaattgagcatctatgt |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
7423436 |
tagataaataggttaattgagcatctatgt |
7423465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 7429645 - 7429872
Alignment:
| Q |
1 |
attgacaatgtctttctcttcaacccatctatctcttcctattactttgtctagttcctccgtagctctcttgataatctctggctttttcacaagctcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
7429645 |
attgacaatgtctttctcttcaacccatctatctctccctattactctatctagttcctctgtagctctcttgataatctctggccttttcacaagctca |
7429744 |
T |
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| Q |
101 |
gagattgcccattcaactgtaactgtagatgtatctgtcccacctgctattaagtcctacgaaattgatatataacatatgatattggtatagtcttgtt |
200 |
Q |
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| T |
7429745 |
gaaattgcccattctattattacagaagaggtatctgtcccaccagctattaggtcctggggaatagatgtataacatatgatattagtatagtcttgtt |
7429844 |
T |
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| Q |
201 |
tagataaataggttaattgagcatctat |
228 |
Q |
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| T |
7429845 |
tggataaaaaggttaattgaacatctat |
7429872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 125
Target Start/End: Original strand, 7415582 - 7415701
Alignment:
| Q |
6 |
caatgtctttctcttcaacccatctatctcttcctattactttgtctagttcctccgtagctctcttgataatctctggctttttcacaagctcggagat |
105 |
Q |
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||||||||||||||||||||||||||||| ||||||| ||| | ||||| ||||| || ||| |||||| |||||||| ||| | || ||||||||||| |
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| T |
7415582 |
caatgtctttctcttcaacccatctatcttttcctatcactctatctagctcctcggttgctttcttgaagatctctggttttctaaccagctcggagat |
7415681 |
T |
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| Q |
106 |
tgcccattcaactgtaactg |
125 |
Q |
| |
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||||||||| ||||| |||| |
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| T |
7415682 |
tgcccattctactgttactg |
7415701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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