View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18566_low_23 (Length: 242)
Name: NF18566_low_23
Description: NF18566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18566_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 1836847 - 1836942
Alignment:
| Q |
16 |
atagaacgaaaagatcacaaaagaagagatttgaacactctttcatgtgccatcggaccatacaatagtattggatccataactaagtttgccttt |
111 |
Q |
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| T |
1836847 |
atagaacgaaaagatcacaaaagaagagatttgaacactctttcatgtgccatcgggccatacaatagtattggatccataactaagtttgtcttt |
1836942 |
T |
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Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 1837107 - 1837210
Alignment:
| Q |
125 |
tagttcaaatgaagagttttttgtggtga-tttatacattgaattgatcaattttttagttgaattaaatctctttgaag-ataaaaaagagtagggtcg |
222 |
Q |
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| T |
1837107 |
tagttcaaatgaagagttttttgtggcgaatttatacattgaattgatcaattttttagttgaattaaatctctttgatgaaaaaaaaagaatagggtcg |
1837206 |
T |
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| Q |
223 |
aacc |
226 |
Q |
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|||| |
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| T |
1837207 |
aacc |
1837210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 1849576 - 1849662
Alignment:
| Q |
46 |
ttgaacactctttcatgtgccatcggaccatacaatagtattggatccataactaagtttgcctttattta--ttgtttaatagttca |
131 |
Q |
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| T |
1849576 |
ttgaacact-tttcatgtgccatcgggccatacaatagtattggatccataactaagtttgcctttatttattttgtttaatagttca |
1849662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 1849730 - 1849792
Alignment:
| Q |
136 |
aagagttttttgtggtgatttatacattgaattgatcaa-ttttttagttgaattaaatctctt |
198 |
Q |
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| T |
1849730 |
aagagtttttt-tgttgattaatacattgaattggtcaatttttttagttggattaaatctctt |
1849792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 17847732 - 17847765
Alignment:
| Q |
45 |
tttgaacactctttcatgtgccatcggaccatac |
78 |
Q |
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| T |
17847732 |
tttgaacactctttcatgtgccatcgggccatac |
17847765 |
T |
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