View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18566_low_24 (Length: 229)
Name: NF18566_low_24
Description: NF18566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18566_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 392812 - 392614
Alignment:
| Q |
16 |
aaacacacaccagtacacataccataatattannnnnnnaattttgaagggatctactcgtttattaaagaagacagattttgatattcagattgattgg |
115 |
Q |
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|||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
392812 |
aaacacacaccagtacacataccatatttttttattttttattttgaagggatctactcgtttattaaagaagacagattttgatatttagtttgattgg |
392713 |
T |
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| Q |
116 |
ttttattctaaattttaattataggatatgttcaattatgttattgagaattacaaatgttacttccaatttagtcaatgtgtttattgtggttaaatt |
214 |
Q |
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| T |
392712 |
ttttattctaaattttaattataggatatgttcaattatgttattgagaattacaaatgttacttccaatttagtcaatgtgtttattgtggttaaatt |
392614 |
T |
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