View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18566_low_3 (Length: 510)
Name: NF18566_low_3
Description: NF18566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18566_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 206
Target Start/End: Complemental strand, 17026010 - 17025809
Alignment:
| Q |
5 |
atgagaagatgctatagaataaacagaatagaatctcgaagttatgtgaatattctaaaaccatttatgggtattattgaaatcgccaattggatttgaa |
104 |
Q |
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| T |
17026010 |
atgagaagatgctatagaataaacagaatagaatctcgaaggtatgtgaatattctaaaaccatttatgggtattattgaaatcgccaattggatttgac |
17025911 |
T |
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| Q |
105 |
gtccaaatcttaacgatgagtcaaaattctattgaaaaaagctaacatgtgttctaagacacaagttaatttatgggtattattgtaatcaatgcatttg |
204 |
Q |
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| T |
17025910 |
gtccaaatcttaacgatgagtcaaaattctattgaaaaaagctaacatgtgttctaagacacaagttaatttatgggtattattgtaatcaatgcatttg |
17025811 |
T |
|
| Q |
205 |
aa |
206 |
Q |
| |
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|| |
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| T |
17025810 |
aa |
17025809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 261 - 493
Target Start/End: Complemental strand, 17025625 - 17025406
Alignment:
| Q |
261 |
tattttagtactttaaaggcacaacttagcatgagcaattatataatatgaattactacatcaaa-tgaacctggacgaaacattgaaccaaagggaaat |
359 |
Q |
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| T |
17025625 |
tattttagtatgttaagggcacaacttagcatgagcaattatataatatgaattactacatcaaaatgaacctggacgaaacattgaaccaaagggaaat |
17025526 |
T |
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| Q |
360 |
gagacattccaacatcgagtagccacattatgttcttccatacatgtttaaagatgcaaatatcacgcaagtgttaaatggaatcaaatatgtttgggac |
459 |
Q |
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| T |
17025525 |
gagacattccaacatcgagtagccacattatgttcttcc--------------atgcaaatatcacgcaagtgtcaaatggaatcaaatacgtttaggac |
17025440 |
T |
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| Q |
460 |
cttttcttagattttgaaaattttaagcacttta |
493 |
Q |
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| T |
17025439 |
cttttcttagattttgaaaattttaagcacttta |
17025406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 297 - 493
Target Start/End: Complemental strand, 17003187 - 17003005
Alignment:
| Q |
297 |
aattatataatatgaattactacatcaaatgaacctggacgaaacattgaaccaaagggaaatgagacattccaacatcgagtagccacattatgttctt |
396 |
Q |
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| T |
17003187 |
aattatataatatgaattactatatcaaatgaacctggacgaaacattgaaccaaagggaaatgagacattccaacatcgagtagccacattatgttctt |
17003088 |
T |
|
| Q |
397 |
ccatacatgtttaaagatgcaaatatcacgcaagtgttaaatggaatcaaatatgtttgggaccttttcttagattttgaaaattttaagcacttta |
493 |
Q |
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| T |
17003087 |
cc--------------atgcaaatatcacgcaagtgtcaaatggaatcaaatatgtttgggaccttttcttagattttgaaaattttaagcacttta |
17003005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 17003393 - 17003257
Alignment:
| Q |
1 |
gagcatgagaagatgctatagaataaacagaatagaatctcgaagttatgtgaatattctaaaaccatttatgggtattattgaaatcgccaattggatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||||| || |||||||| ||||||||||||||||| | |
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| T |
17003393 |
gagcatgagaagatgctatagaataaactgaatagaatctcgaaggtgtgtgaatattctgaaaccatatacgggtattaatgaaatcgccaattggaat |
17003294 |
T |
|
| Q |
101 |
tgaagtccaaatcttaacgatgagtcaaaattctatt |
137 |
Q |
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||||||||||||||| | ||| | ||||||||||| |
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| T |
17003293 |
caaagtccaaatcttaaagttgaatgaaaattctatt |
17003257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 16995363 - 16995326
Alignment:
| Q |
326 |
tgaacctggacgaaacattgaaccaaagggaaatgaga |
363 |
Q |
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| T |
16995363 |
tgaacctggacgaaacattgaacaaaagggaaatgaga |
16995326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 259
Target Start/End: Complemental strand, 17025790 - 17025756
Alignment:
| Q |
225 |
gattatttgaatgcataaaatttaagaaaatattt |
259 |
Q |
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| T |
17025790 |
gattatttgaatgcacaaaatttaagaaaatattt |
17025756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 30784297 - 30784261
Alignment:
| Q |
226 |
attatttgaatgcataaaatttaagaaaatatttcta |
262 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||| |
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| T |
30784297 |
attaattgaatgcataaaatttaagaaaaaatttcta |
30784261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 22651146 - 22651105
Alignment:
| Q |
225 |
gattatttgaatgcataaaatttaagaaaatatttctatttt |
266 |
Q |
| |
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||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
22651146 |
gattaattgaatgcataaaatttaagagaatatttctatttt |
22651105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 50685674 - 50685714
Alignment:
| Q |
226 |
attatttgaatgcataaaatttaagaaaatatttctatttt |
266 |
Q |
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|||| ||||||||| |||||| ||||||||||||||||||| |
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| T |
50685674 |
attaattgaatgcacaaaattcaagaaaatatttctatttt |
50685714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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