View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18566_low_4 (Length: 461)
Name: NF18566_low_4
Description: NF18566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18566_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 52711301 - 52711736
Alignment:
| Q |
18 |
tggtacacactcattcttttcttgtttgaatatagagctgctaaacttcttatttcagaacagtttccagaaactgcagcttctataacatcattcaaag |
117 |
Q |
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| T |
52711301 |
tggtacacactcattcttttcttgtttgaatatagagctgctaaacttcttatttcagaacagtttccagaaactgcagcttctataacatcattcaaag |
52711400 |
T |
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| Q |
118 |
ttgattctgatgttgtttcgcttaacggtagagaaccacttcaaactgatgcagagataggtgaagatggtaaacttcatgttgttgttaaaagatcaac |
217 |
Q |
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| T |
52711401 |
ttgattctgatgttgtttcgcttaacggtagagaaacacttcaaactgatgcagagacaggtgaagatggtaaacttcacgttgttgttaaaagatcaac |
52711500 |
T |
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| Q |
218 |
tactaactctatggtatctggttcatttaacaaatctcatttaaataatatgacgccgcgagcttcaaatcttaccggtgttgagatatattcggttcaa |
317 |
Q |
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| T |
52711501 |
tacaaactctattgcatctggatcgtttaacaaatctcatttaaataatatgacgctgcgagcttcaaatcttacaggtgttgagatatattcggttcaa |
52711600 |
T |
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| Q |
318 |
acatcaaaagaaccaacaccgagagcttctggttttaaccaaactgatttttatatgcctccgagtccaaaaaatggttacccaaatagtgttcggagta |
417 |
Q |
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| T |
52711601 |
acatcaacagaaccaacaccgagagcttctggttttaaccaaactgatttttatatgcctccgagtccaaaaaatggttacccaaatagtgttcggagta |
52711700 |
T |
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| Q |
418 |
atggtaatggtactaatggtgatgtttactctgtgc |
453 |
Q |
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| T |
52711701 |
atggtaatggtactaatggtgatgtttactctgtgc |
52711736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 39 - 371
Target Start/End: Original strand, 52716630 - 52716962
Alignment:
| Q |
39 |
ttgtttgaatatagagctgctaaacttcttatttcagaacagtttccagaaactgcagcttctataacatcattcaaagttgattctgatgttgtttcgc |
138 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
52716630 |
ttgtttgaatatagagctgctaaacttcttataacagaacagtttcctgaaactgcagcttctataacatcattcaaagttgattctgacgttgtttctc |
52716729 |
T |
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| Q |
139 |
ttaacggtagagaaccacttcaaactgatgcagagataggtgaagatggtaaacttcatgttgttgttaaaagatcaactactaactctatggtatctgg |
238 |
Q |
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| T |
52716730 |
ttaacggtagagaaccacttcaaactgatgcagagataggtgaagatggtaaacttcatgttgttgttaaaagatcaactactaactctatggtatctgg |
52716829 |
T |
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| Q |
239 |
ttcatttaacaaatctcatttaaataatatgacgccgcgagcttcaaatcttaccggtgttgagatatattcggttcaaacatcaaaagaaccaacaccg |
338 |
Q |
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| T |
52716830 |
ttcatttaacaaatctcatttaaataatatgacgccacgagcttcaaatctaaccggtgttgagatatattctgttcaatcatcaagagaaccaacacca |
52716929 |
T |
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| Q |
339 |
agagcttctggttttaaccaaactgatttttat |
371 |
Q |
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|||| |||| ||||||||||||||||||||||| |
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| T |
52716930 |
agaggttctagttttaaccaaactgatttttat |
52716962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 33102380 - 33102441
Alignment:
| Q |
75 |
gaacagtttccagaaactgcagcttctataacatcattcaaagttgattctgatgttgtttc |
136 |
Q |
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| T |
33102380 |
gaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttc |
33102441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 75 - 199
Target Start/End: Original strand, 34971172 - 34971296
Alignment:
| Q |
75 |
gaacagtttccagaaactgcagcttctataacatcattcaaagttgattctgatgttgtttcgcttaacggtagagaaccacttcaaactgatgcagaga |
174 |
Q |
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||||||||||| || ||||| | |||||| | ||||||||||||||||||||||||| |||| | | |||| ||| |||||||||||||| || || |
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| T |
34971172 |
gaacagtttcctgatactgctggttctattatatcattcaaagttgattctgatgttctttctttggatggtaaagagccacttcaaactgaagctgaag |
34971271 |
T |
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| Q |
175 |
taggtgaagatggtaaacttcatgt |
199 |
Q |
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| T |
34971272 |
ttggtgaagatggtaaacttcatgt |
34971296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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