View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18566_low_6 (Length: 430)
Name: NF18566_low_6
Description: NF18566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18566_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 33102696 - 33102284
Alignment:
| Q |
1 |
tcatcagcaccaaaattagaatgtctcggagcatagcccatcatagagtagaaatccgtatgattaaaattagaccctcgcggcgtcggattccgggaag |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102696 |
tcattagcaccaaaattagaatgtctcggagcatagcccatcatagagtagaaatccgtatgattaaaattagaccctcgcggcgtcggattccgggaag |
33102597 |
T |
|
| Q |
101 |
aactcaaactataaatctctgctccggtgagattcgacggccgcggagtcatcataaaagatctccgggaagcgtttgattttctgacatgaacatgaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102596 |
aactcaaactataaatctctgctccggtgagattcgacggccgtggagtcatcataaaagatctccgggaagcgtttgattttctgacatgaacatgaag |
33102497 |
T |
|
| Q |
201 |
cttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102496 |
cttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagca |
33102397 |
T |
|
| Q |
301 |
gtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaaccacaactt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102396 |
gtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaaccacaactt |
33102297 |
T |
|
| Q |
401 |
gaaccataagggt |
413 |
Q |
| |
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| T |
33102296 |
gaaccataagggt |
33102284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 410
Target Start/End: Complemental strand, 52716731 - 52716573
Alignment:
| Q |
252 |
aagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaa |
351 |
Q |
| |
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|||||||||||| ||||||||||| || || || | |||||||| |||||||||||||||||||| | || ||||| |||||| | | ||| ||||| |
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| T |
52716731 |
aagagaaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttctgttataagaagtttagcagctctatattcaaac |
52716632 |
T |
|
| Q |
352 |
agaaacaataacaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataag |
410 |
Q |
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| T |
52716631 |
aaaaacaacataagagtgtaccaaataacactttgaagaacaacaatttgtaccataag |
52716573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 52711419 - 52711358
Alignment:
| Q |
256 |
gaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttc |
317 |
Q |
| |
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| T |
52711419 |
gaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttc |
52711358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 108 - 407
Target Start/End: Original strand, 10838490 - 10838792
Alignment:
| Q |
108 |
actataaatctctgctccggtgagattcgacggccgcggagt---catcataaaagatctccgggaagcgtttgattttctgacatgaacatgaagctta |
204 |
Q |
| |
|
|||||||||||| ||||| || | ||| ||||| |||||||| ||||||||| || ||||| || ||||| || || || ||| |||||| | ||| |
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| T |
10838490 |
actataaatctcagctccagtcaaatttgacggtcgcggagtattcatcataaatgacctccgcgacgcgttagacttcctaacagtaacatgtaacttc |
10838589 |
T |
|
| Q |
205 |
ccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagttt |
304 |
Q |
| |
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|||||||||||||| ||||| || |||||||||||||| ||||| | || | ||| || ||||| ||||||||||||| || ||||| || |||| |
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| T |
10838590 |
ccatcatcaccaactgatgcatcagtttcaagaaaatctcttccatctaacgacataacgtccgaatcgaccttaaaggaaacgatggaagccgcggttt |
10838689 |
T |
|
| Q |
305 |
caggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaaccacaacttgaac |
404 |
Q |
| |
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| |||||||| ||||| |||| ||||||||||||||| |||||||||||||| | || | |||||||||||| |||||||||||||||||||||||||| |
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|
| T |
10838690 |
ctggaaactgctccatgattaaaagcttagcaccacggtactcaaaaagaaaaagcaaaagagtgtaccaaataatacactgaagaaccacaacttgaac |
10838789 |
T |
|
| Q |
405 |
cat |
407 |
Q |
| |
|
||| |
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|
| T |
10838790 |
cat |
10838792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 176 - 413
Target Start/End: Complemental strand, 34971313 - 34971076
Alignment:
| Q |
176 |
ttgattttctgacatgaacatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaac |
275 |
Q |
| |
|
|||||||||| || | |||||||| |||||||| |||||||| ||||| || || | ||| ||| | ||||| | ||||| ||||||||||||||| |
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| T |
34971313 |
ttgattttctaactttcacatgaagtttaccatcttcaccaacttcagcttcagtttgaagtggctctttaccatccaaagaaagaacatcagaatcaac |
34971214 |
T |
|
| Q |
276 |
cttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaa |
375 |
Q |
| |
|
|| || || ||||||||| ||||||| |||||||||||||| | ||| |||| | ||||||| | ||||||||| | |||||| | ||| || |||||| |
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| T |
34971213 |
tttgaatgatataatagaaccagcagtatcaggaaactgttcaacaatgagaatcctagcacccctatactcaaacaaaaacaacatcaatgtataccaa |
34971114 |
T |
|
| Q |
376 |
atgatacactgaagaaccacaacttgaaccataagggt |
413 |
Q |
| |
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|||||||| |||||||| || | ||||||||||||||| |
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| T |
34971113 |
atgatacattgaagaacaactatttgaaccataagggt |
34971076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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