View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18566_low_8 (Length: 355)
Name: NF18566_low_8
Description: NF18566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18566_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 9 - 341
Target Start/End: Complemental strand, 4653229 - 4652897
Alignment:
| Q |
9 |
attaagatcaccatagcgattgttgcgacgattatagtttccggcctcttgctagcaatgatcgtaggcaacacatctttttggctaaggaaaaagcttc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4653229 |
attaagatcaccatagcgattgttgcgacgattgtagtttccagcctcttgctagcaatgatcgtaggcaacacatttttttggctaaggaaaaagcttc |
4653130 |
T |
|
| Q |
109 |
atattgtcatgaaagatagctcatcaaagacaaagaacaaagggtcgtcatctttgccaccacatttgtgtcgctccttcacaatcgcagagatcaaagc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4653129 |
atattgtcatgaaagatagctcatcaaagacaaagaacaaagggtcgtcatctttgccaccacatttgtgtcgctccttcacaatcgcagagatcaaagc |
4653030 |
T |
|
| Q |
209 |
agccacaaataacttcgatgatgttttcatcatcggtgttggaggatttggcaacgtgtacaaaggttgcatcgatggatccatgcctgttgcgataaaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4653029 |
agccacaaataacttcgatgatgttttcatcatcggtgttggaggatttggcaacgtgtacaaaggttgcatcgatggatccatgcctgttgcgataaaa |
4652930 |
T |
|
| Q |
309 |
cgcctcaaatctggctctcaacaaggtgccaac |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
4652929 |
cgcctcaaatctggctctcaacaaggtgccaac |
4652897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 70 - 341
Target Start/End: Complemental strand, 4672288 - 4672017
Alignment:
| Q |
70 |
tcgtaggcaacacatctttttggctaaggaaaaagcttcatattgtcatgaaagatagctcatcaaagacaaagaacaaagggtcgtcatctttgccacc |
169 |
Q |
| |
|
||||||||| |||| ||||| ||||||||||| | || | | || |||||||||||||||||| |||||||||||||||||||| || ||||||| || |
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|
| T |
4672288 |
tcgtaggcatcacaggttttttgctaaggaaaaggattaaaaatgccatgaaagatagctcatcgaagacaaagaacaaagggtcaccacctttgccgcc |
4672189 |
T |
|
| Q |
170 |
acatttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataacttcgatgatgttttcatcatcggtgttggaggatttggcaacgtgtac |
269 |
Q |
| |
|
|| ||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||| || |||||||| |||||||| ||||| ||| ||||| |
|
|
| T |
4672188 |
ccacttgtgccgttcctttacaatcgcagagatcaaagcagccacaaacaacttcgatgatgcttctatcatcggagttggagggtttggaaacctgtac |
4672089 |
T |
|
| Q |
270 |
aaaggttgcatcgatggatccatgcctgttgcgataaaacgcctcaaatctggctctcaacaaggtgccaac |
341 |
Q |
| |
|
|||||||| |||||||||||| | |||||| |||||||| |||||||| |||||||| |||||||||||| |
|
|
| T |
4672088 |
aaaggttgtgtcgatggatccacacttgttgccataaaacggctcaaatcgggctctcagcaaggtgccaac |
4672017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 44 - 341
Target Start/End: Complemental strand, 4666609 - 4666312
Alignment:
| Q |
44 |
agtttccggcctcttgctagcaatgatcgtaggcaacacatctttttggctaaggaaaaagcttcatattgtcatgaaagatagctcatcaaagacaaag |
143 |
Q |
| |
|
|||||| |||||| |||||||||| || || || | || | |||||||||||||| || | |||| | ||||||| ||||| || || || |||||| |
|
|
| T |
4666609 |
agtttcaggcctcgtgctagcaattattgtgggtatcatagttttttggctaaggagaaggtttcacaatgtcatggcagataacttgtcgaaaacaaag |
4666510 |
T |
|
| Q |
144 |
aacaaagggtcgtcatctttgccaccacatttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataacttcgatgatgttttcatcatcg |
243 |
Q |
| |
|
|||| || || |||||||||||| || |||||||| || ||||| ||||| |||||||||| |||||||||||| ||||| || |||| ||||||||||| |
|
|
| T |
4666509 |
aacacagagttgtcatctttgccgccccatttgtgccggtcctttacaattgcagagatcagagcagccacaaacaactttgacgatgatttcatcatcg |
4666410 |
T |
|
| Q |
244 |
gtgttggaggatttggcaacgtgtacaaaggttgcatcgatggatccatgcctgttgcgataaaacgcctcaaatctggctctcaacaaggtgccaac |
341 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4666409 |
gagttggagggtttggcaacgtgtacaaaggttgtgtcgatggatccacacttgttgccataaaacgcctcaaatcaggctctcaacaaggtgccaac |
4666312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 171 - 341
Target Start/End: Complemental strand, 4630456 - 4630286
Alignment:
| Q |
171 |
catttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataacttcgatgatgttttcatcatcggtgttggaggatttggcaacgtgtaca |
270 |
Q |
| |
|
||||||||||||| ||| |||||||| |||||||||||||||||||| ||||| || ||| |||||||||||| ||||||| ||||| |||||||||| |
|
|
| T |
4630456 |
catttgtgtcgctactttacaatcgcggagatcaaagcagccacaaacaactttgacaatgatttcatcatcggatttggagggtttgggaacgtgtaca |
4630357 |
T |
|
| Q |
271 |
aaggttgcatcgatggatccatgcctgttgcgataaaacgcctcaaatctggctctcaacaaggtgccaac |
341 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4630356 |
aaggttgtgtcgatggatccacacctgttgcgataaaacgcctcaaatcaggctctcaacaaggtgccaac |
4630286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 159 - 341
Target Start/End: Complemental strand, 4643263 - 4643081
Alignment:
| Q |
159 |
tctttgccaccacatttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataacttcgatgatgttttcatcatcggtgttggaggatttg |
258 |
Q |
| |
|
|||||||| || ||| |||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||| ||| |||||||| |||||||| |||| |
|
|
| T |
4643263 |
tctttgccgccccatctgtgccgctcctttacaatcgcagagatcaaagcagctacaaacaacttcgatgatgcttttatcatcggagttggagggtttg |
4643164 |
T |
|
| Q |
259 |
gcaacgtgtacaaaggttgcatcgatggatccatgcctgttgcgataaaacgcctcaaatctggctctcaacaaggtgccaac |
341 |
Q |
| |
|
||||||||||||||||||| | |||||||||| | ||||||| | || ||||||||||| ||||||||||||||||||||| |
|
|
| T |
4643163 |
gcaacgtgtacaaaggttgtgttgatggatccacacttgttgcggttaagcgcctcaaatcgggctctcaacaaggtgccaac |
4643081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 135 - 341
Target Start/End: Complemental strand, 4661387 - 4661181
Alignment:
| Q |
135 |
aagacaaagaacaaagggtcgtcatctttgccaccacatttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataacttcgatgatgttt |
234 |
Q |
| |
|
||||||||||||| ||| ||||||||||| || |||||||| |||| ||| ||||| |||||||||| |||||||||||| ||||| ||||||| || |
|
|
| T |
4661387 |
aagacaaagaacactaggttatcatctttgccgccccatttgtgccgctactttacaattgcagagatcagagcagccacaaaaaactttgatgatgatt |
4661288 |
T |
|
| Q |
235 |
tcatcatcggtgttggaggatttggcaacgtgtacaaaggttgcatcgatggatccatgcctgttgcgataaaacgcctcaaatctggctctcaacaagg |
334 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||||||||||| | |||||||| | | ||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
4661287 |
tcatcattggagttggagggtttggcaacgtgtacaaaggttgtgttgatggatcaacacttgttgcgattaaacgcctcaaatcgggctctcaacaagg |
4661188 |
T |
|
| Q |
335 |
tgccaac |
341 |
Q |
| |
|
|| |||| |
|
|
| T |
4661187 |
tgtcaac |
4661181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 138 - 337
Target Start/End: Complemental strand, 4636437 - 4636238
Alignment:
| Q |
138 |
acaaagaacaaagggtcgtcatctttgccaccacatttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataacttcgatgatgttttca |
237 |
Q |
| |
|
|||||||| |||| |||||| |||| ||| | ||||||| |||| ||| |||||||||||||||| |||||||||||| ||||||||||||| || |
|
|
| T |
4636437 |
acaaagaatgaaggttcgtcaactttaccatcctatttgtgccgctactttacaatcgcagagatcagagcagccacaaaaaacttcgatgatgaaaaca |
4636338 |
T |
|
| Q |
238 |
tcatcggtgttggaggatttggcaacgtgtacaaaggttgcatcgatggatccatgcctgttgcgataaaacgcctcaaatctggctctcaacaaggtgc |
337 |
Q |
| |
|
| ||||||||||| || ||||| || ||||||||||||| ||| |||||||||| || ||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
4636337 |
ttatcggtgttggggggtttgggaatgtgtacaaaggtttcattgatggatccacacccgttgcgataaaacgcctcaggtcgggctctcaacaaggtgc |
4636238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 213 - 310
Target Start/End: Original strand, 4712677 - 4712774
Alignment:
| Q |
213 |
acaaataacttcgatgatgttttcatcatcggtgttggaggatttggcaacgtgtacaaaggttgcatcgatggatccatgcctgttgcgataaaacg |
310 |
Q |
| |
|
||||| |||||||| ||| |||| |||||||| ||||||||||| ||||||||||||||||||| ||| |||||| ||| ||||||||||||||||| |
|
|
| T |
4712677 |
acaaacaacttcgaagatatttttatcatcggggttggaggattcggcaacgtgtacaaaggttacattgatggactcatacctgttgcgataaaacg |
4712774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 171 - 335
Target Start/End: Complemental strand, 4863436 - 4863272
Alignment:
| Q |
171 |
catttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataacttcgatgatgttttcatcatcggtgttggaggatttggcaacgtgtaca |
270 |
Q |
| |
|
|||||||| |||| || ||||| ||||||| | ||| || ||||| ||||| || ||| |||||||||| || |||||||| || ||||||||||||| |
|
|
| T |
4863436 |
catttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggcaacgtgtaca |
4863337 |
T |
|
| Q |
271 |
aaggttgcatcgatggatccatgcctgttgcgataaaacgcctcaaatctggctctcaacaaggt |
335 |
Q |
| |
|
|||||| || |||||| ||| ||||||||||||||||| || ||| | || |||||||||||| |
|
|
| T |
4863336 |
aaggttatattgatggagacatacctgttgcgataaaacgtcttaaaccaggttctcaacaaggt |
4863272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 336
Target Start/End: Original strand, 4816797 - 4816998
Alignment:
| Q |
135 |
aagacaaagaacaaagggtcgtcatctttgccaccacatttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataacttcgatgatgttt |
234 |
Q |
| |
|
||||||||||| |||| || ||| ||| ||| | |||||||| |||| || ||||| || || || |||||||| ||||| |||||||| ||| ||| |
|
|
| T |
4816797 |
aagacaaagaaacaaggttcctcaagtttaccatcccatttgtgccgctattttacaatagcggaaataaaagcagctacaaacaacttcgaagatattt |
4816896 |
T |
|
| Q |
235 |
tcatcatcggtgttggaggatttggcaacgtgtacaaaggttgcatcgatggatccatgcctgttgcgataaaacgcctcaaatctggctctcaacaagg |
334 |
Q |
| |
|
| |||||||| |||||||| || ||||| ||||||||||||| || |||||| | || |||||||||||||| || ||| |||| ||||||||||| |
|
|
| T |
4816897 |
ttatcatcggggttggagggttcggcaatgtgtacaaaggttatattgatggagttacaccagttgcgataaaacgtcttaaacctggttctcaacaagg |
4816996 |
T |
|
| Q |
335 |
tg |
336 |
Q |
| |
|
|| |
|
|
| T |
4816997 |
tg |
4816998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 135 - 336
Target Start/End: Original strand, 4784368 - 4784569
Alignment:
| Q |
135 |
aagacaaagaacaaagggtcgtcatctttgccaccacatttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataacttcgatgatgttt |
234 |
Q |
| |
|
||||||||||| |||| || ||| ||| ||| | |||||||| |||| || ||||| || || || |||||||| ||||| |||||||| ||| ||| |
|
|
| T |
4784368 |
aagacaaagaaacaaggttcctcaagtttaccatcccatttgtgccgctattttacaatagcggaaataaaagcagctacaaacaacttcgaagatattt |
4784467 |
T |
|
| Q |
235 |
tcatcatcggtgttggaggatttggcaacgtgtacaaaggttgcatcgatggatccatgcctgttgcgataaaacgcctcaaatctggctctcaacaagg |
334 |
Q |
| |
|
| |||||||| |||||||| || ||||| ||||||||||||| || |||||| | || |||||||||||||| || ||| | || ||||||||||| |
|
|
| T |
4784468 |
ttatcatcggggttggagggttcggcaatgtgtacaaaggttatattgatggagttacaccagttgcgataaaacgtcttaaaccaggttctcaacaagg |
4784567 |
T |
|
| Q |
335 |
tg |
336 |
Q |
| |
|
|| |
|
|
| T |
4784568 |
tg |
4784569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 310
Target Start/End: Original strand, 4846590 - 4846729
Alignment:
| Q |
171 |
catttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataacttcgatgatgttttcatcatcggtgttggaggatttggcaacgtgtaca |
270 |
Q |
| |
|
|||||||| |||| || ||||| || ||||| | || ||| ||||| |||||||| ||| |||| ||||| || | |||||| || ||||||||||||| |
|
|
| T |
4846590 |
catttgtgccgctattttacaatagcggagataagagaagctacaaacaacttcgaagatatttttatcattggagctggagggttcggcaacgtgtaca |
4846689 |
T |
|
| Q |
271 |
aaggttgcatcgatggatccatgcctgttgcgataaaacg |
310 |
Q |
| |
|
|||||| |||| ||||| || ||||||||||||||||| |
|
|
| T |
4846690 |
aaggttacatcaatggactcacacctgttgcgataaaacg |
4846729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 148 - 341
Target Start/End: Original strand, 18926285 - 18926478
Alignment:
| Q |
148 |
aagggtcgtcatctttgccaccacatttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataacttcgatgatgttttcatcatcggtgt |
247 |
Q |
| |
|
|||||| | ||||||| || || |||||||| |||| ||| ||||| |||||||| |||||||||||||||||||| ||||||| ||| |||||||| || |
|
|
| T |
18926285 |
aagggttgccatctttaccgccccatttgtgccgctactttacaattgcagagataaaagcagccacaaataactttgatgatgatttaatcatcggagt |
18926384 |
T |
|
| Q |
248 |
tggaggatttggcaacgtgtacaaaggttgcatcgatggatccatgcctgttgcgataaaacgcctcaaatctggctctcaacaaggtgccaac |
341 |
Q |
| |
|
|||||| |||||||||||||| ||||||| ||||||| ||||| || ||||| |||||||| |||||| | |||||||||||||| |||||| |
|
|
| T |
18926385 |
tggagggtttggcaacgtgtataaaggtttcatcgataaatccacacccgttgcaataaaacgtctcaaaccaggctctcaacaaggggccaac |
18926478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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