View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18567_high_15 (Length: 245)

Name: NF18567_high_15
Description: NF18567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18567_high_15
NF18567_high_15
[»] chr8 (2 HSPs)
chr8 (5-241)||(42991291-42991525)
chr8 (5-198)||(35017979-35018172)
[»] chr3 (2 HSPs)
chr3 (5-241)||(38213978-38214214)
chr3 (5-241)||(38218197-38218433)
[»] chr4 (6 HSPs)
chr4 (74-142)||(53495383-53495451)
chr4 (74-160)||(53488672-53488758)
chr4 (66-168)||(53492989-53493091)
chr4 (71-168)||(53499286-53499383)
chr4 (71-141)||(53502408-53502478)
chr4 (62-174)||(52591022-52591134)
[»] chr6 (2 HSPs)
chr6 (80-171)||(10411374-10411465)
chr6 (110-171)||(10379765-10379826)
[»] chr7 (4 HSPs)
chr7 (61-182)||(37188910-37189031)
chr7 (110-174)||(32715057-32715121)
chr7 (110-174)||(32709835-32709899)
chr7 (110-174)||(32718435-32718499)
[»] chr2 (2 HSPs)
chr2 (66-174)||(16942648-16942756)
chr2 (66-174)||(17013313-17013421)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 42991291 - 42991525
Alignment:
Q  5 tgcagattcttggttgacaacatcccaataaggatcttcaagaatgctgaatcgattggtattcctttcccaaagaaccaaccaatgagaatatattcaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||    
T  42991291 tgcagattcttggttgacaacatcccaataaggatcttcaagaatgctgaatctattagtattcctttcccaaagaaccaaccgatgagaatatattcaa 42991390  T
Q  105 gtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttcaaagctac 204  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42991391 gtctttggaacgctgaagattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttcaaagctac 42991490  T
Q  205 tgaattatcctctgtctcttccacttcctcctctgat 241  Q
    |||||||||  |||||||||||||||||| |||||||    
T  42991491 tgaattatc--ctgtctcttccacttccttctctgat 42991525  T

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Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 35017979 - 35018172
Alignment:
Q  5 tgcagattcttggttgacaacatcccaataaggatcttcaagaatgctgaatcgattggtattcctttcccaaagaaccaaccaatgagaatatattcaa 104  Q
    ||||||||||||||||| ||||| ||||||||| | |||||||||| |||||| |||||| ||||||| ||||||||||||||||||||||| ||||| |    
T  35017979 tgcagattcttggttgataacatgccaataagggtattcaagaatgttgaatctattggtgttccttttccaaagaaccaaccaatgagaatctattcca 35018078  T
Q  105 gtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttcaa 198  Q
    | || ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||    
T  35018079 gcctgtggaatgctgatgattgggccacaagaggtggattggtgaaaactgattggtccaaagcaccctttacagcatactaccgtaatttcaa 35018172  T

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Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 38214214 - 38213978
Alignment:
Q  5 tgcagattcttggttgacaacatcccaataaggatcttcaagaatgctgaatcgattggtattcctttcccaaagaaccaaccaatgagaatatattcaa 104  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||    
T  38214214 tgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaa 38214115  T
Q  105 gtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttcaaagctac 204  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38214114 gtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttcaaagctac 38214015  T
Q  205 tgaattatcctctgtctcttccacttcctcctctgat 241  Q
    ||| ||||| ||||||||||||||||||| |||||||    
T  38214014 tgagttatcttctgtctcttccacttccttctctgat 38213978  T

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Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 38218433 - 38218197
Alignment:
Q  5 tgcagattcttggttgacaacatcccaataaggatcttcaagaatgctgaatcgattggtattcctttcccaaagaaccaaccaatgagaatatattcaa 104  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||    
T  38218433 tgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaa 38218334  T
Q  105 gtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttcaaagctac 204  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38218333 gtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttcaaagctac 38218234  T
Q  205 tgaattatcctctgtctcttccacttcctcctctgat 241  Q
    ||| ||||| ||||||||||||||||||| |||||||    
T  38218233 tgagttatcttctgtctcttccacttccttctctgat 38218197  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 53495383 - 53495451
Alignment:
Q  74 ccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggt 142  Q
    |||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  53495383 ccaaagaatcaaccaatgaggatatattcaagtctatggaatgctgatgattgggcaacaagaggtggt 53495451  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 53488758 - 53488672
Alignment:
Q  74 ccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattgg 160  Q
    |||||||| || ||||||||| ||||||||||||| ||||| || ||||||||||| |||||||||||| | |||||||| ||||||    
T  53488758 ccaaagaagcagccaatgagattatattcaagtctatggaatgccgatgattgggcaacaagaggtggtcttgtgaaaacagattgg 53488672  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 168
Target Start/End: Original strand, 53492989 - 53493091
Alignment:
Q  66 ttcctttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa 165  Q
    |||| ||||| || |||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| ||  | || || || |||||||||||    
T  53492989 ttccattccccaaaaaccaaccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaagacagattggtccaa 53493088  T
Q  166 agc 168  Q
    |||    
T  53493089 agc 53493091  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 53499286 - 53499383
Alignment:
Q  71 ttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagc 168  Q
    ||||| || |||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| ||  | || || || ||||||||||||||    
T  53499286 ttccccaaaaaccaaccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaagacagattggtccaaagc 53499383  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 53502408 - 53502478
Alignment:
Q  71 ttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtgg 141  Q
    |||||||||||||||||||||||||||||||||||| | ||||| || ||| | ||||| |||||||||||    
T  53502408 ttcccaaagaaccaaccaatgagaatatattcaagtttgtggaatgcagataactgggcaacaagaggtgg 53502478  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 174
Target Start/End: Original strand, 52591022 - 52591134
Alignment:
Q  62 ggtattcctttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggt 161  Q
    ||||||||||| || || | |||| ||||||| |||||||||||||| ||| | || ||| ||||||| ||||| || ||| | | ||||||||||||||    
T  52591022 ggtattccttttcctaaaagccaagcaatgagtatatattcaagtctttgggatgcagataattgggccacaaggggaggtctagcgaaaactgattggt 52591121  T
Q  162 ccaaagcaccatt 174  Q
    || |||| |||||    
T  52591122 cccaagccccatt 52591134  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 10411374 - 10411465
Alignment:
Q  80 aaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 171  Q
    ||||||||||||| |||||||   ||  | ||||| |||||||||||||||||||| |||||||||| |||||| |||||||||||||||||    
T  10411374 aaccaaccaatgaaaatatataatagcttatggaatgctgatgattgggctacaaggggtggtttggagaaaacagattggtccaaagcacc 10411465  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 10379826 - 10379765
Alignment:
Q  110 tggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 171  Q
    ||||| |||||||||||||| ||||| |||||||| | |||||| |||||||||||||||||    
T  10379826 tggaatgctgatgattgggccacaaggggtggtttagagaaaacagattggtccaaagcacc 10379765  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 37188910 - 37189031
Alignment:
Q  61 tggtattcctttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattgg 160  Q
    |||| |||| ||||| || | ||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||  | || || || ||||||    
T  37188910 tggtgttccattccccaaaagccaaccaatgagaatctattctagtctttggaatgctgatgattgggctacaagaggtggacttgttaagacagattgg 37189009  T
Q  161 tccaaagcaccatttacagctt 182  Q
    ||||| || || ||||| ||||    
T  37189010 tccaatgctccttttactgctt 37189031  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 32715057 - 32715121
Alignment:
Q  110 tggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatt 174  Q
    ||||| || ||||||||||| |||||||||||||||| |||||| |||||||| |||||||||||    
T  32715057 tggaatgcagatgattgggccacaagaggtggtttggagaaaacagattggtcaaaagcaccatt 32715121  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 32709835 - 32709899
Alignment:
Q  110 tggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatt 174  Q
    ||||| || ||||||||||| ||||||||||| || | |||||| ||||||||||||||||||||    
T  32709835 tggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcaccatt 32709899  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 32718435 - 32718499
Alignment:
Q  110 tggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatt 174  Q
    ||||| || ||||||||||| ||||| ||||| || |  |||||||||||||| |||||||||||    
T  32718435 tggaatgcagatgattgggccacaaggggtggattagaaaaaactgattggtcaaaagcaccatt 32718499  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 174
Target Start/End: Original strand, 16942648 - 16942756
Alignment:
Q  66 ttcctttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa 165  Q
    ||||||| |||||||||||| | ||||| |||||||||||||| ||||| || ||| ||||||| || ||||||||  | |||||||| |||||| ||||    
T  16942648 ttccttttccaaagaaccaagccatgaggatatattcaagtctttggaatgcagataattgggccactagaggtgggattgtgaaaacagattggaccaa 16942747  T
Q  166 agcaccatt 174  Q
     || |||||    
T  16942748 tgctccatt 16942756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 174
Target Start/End: Original strand, 17013313 - 17013421
Alignment:
Q  66 ttcctttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa 165  Q
    ||||||| |||||||||||| | ||||| |||||||||||||| ||||| || ||| ||||||| || ||||||||  | |||||||| |||||| ||||    
T  17013313 ttccttttccaaagaaccaagccatgaggatatattcaagtctttggaatgcagataattgggccactagaggtgggattgtgaaaacagattggaccaa 17013412  T
Q  166 agcaccatt 174  Q
     || |||||    
T  17013413 tgctccatt 17013421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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