View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18567_high_8 (Length: 413)

Name: NF18567_high_8
Description: NF18567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18567_high_8
NF18567_high_8
[»] chr3 (3 HSPs)
chr3 (198-397)||(29624188-29624407)
chr3 (14-84)||(29624548-29624618)
chr3 (72-171)||(29624434-29624535)
[»] chr2 (5 HSPs)
chr2 (14-84)||(39463688-39463758)
chr2 (210-328)||(35891473-35891591)
chr2 (72-150)||(39463597-39463675)
chr2 (14-58)||(41634162-41634206)
chr2 (269-329)||(35919920-35919980)
[»] chr4 (2 HSPs)
chr4 (14-84)||(46256733-46256803)
chr4 (14-84)||(46035653-46035722)
[»] chr1 (1 HSPs)
chr1 (198-318)||(21445745-21445863)


Alignment Details
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 198 - 397
Target Start/End: Complemental strand, 29624407 - 29624188
Alignment:
Q  198 caattacggtttttggaatatcatttcatgagtctatatacaacctatacactagaattaatgaagaactcttcggttttacagaaaattagacattt-a 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
T  29624407 caattacggtttttggaatatcatttcatgagtctatatacaacctatacactagaattaatgaagaactcttcggttttacaggaaattagacatttgt 29624308  T
Q  297 atttcaagtgtcctctacagaattagact-------------------tcatttgcagacctaattgttgcggggattatgcatccatctgccaaaaggc 377  Q
      ||||||||||||||||||||  |||||                   |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29624307 ccttcaagtgtcctctacagaaggagacttcatgtccttaattccttatcatttgcagacctaattgttgcgggaattatgcatccatctgccaaaaggc 29624208  T
Q  378 tactcgtttgtccttctact 397  Q
    ||||||||||||||||||||    
T  29624207 tactcgtttgtccttctact 29624188  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 29624618 - 29624548
Alignment:
Q  14 atataagcatttataaaatattaatatgattttaatttagaaaattaaagaatcataccatgattaaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29624618 atataagcatttataaaatattaatatgattttaatttagaaaattaaagaatcaaaccatgattaaaaat 29624548  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 72 - 171
Target Start/End: Complemental strand, 29624535 - 29624434
Alignment:
Q  72 catgattaaaaatttagtaataattttaatacatacnnnnnnnng--gataatatttgtattggaataaaattattatctatatatttttaatcaccctt 169  Q
    |||| |||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29624535 catgcttaaaaatttagtaataattttaatacatacaaaaaaaaaaagataatatttgtattggaataaaattattatctatatatttttaatcaccctt 29624436  T
Q  170 cc 171  Q
    ||    
T  29624435 cc 29624434  T

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Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 39463758 - 39463688
Alignment:
Q  14 atataagcatttataaaatattaatatgattttaatttagaaaattaaagaatcataccatgattaaaaat 84  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  39463758 atataagcatttataaaatattaatatgattttaatctagaaaattaaagaatcaaaccatgattaaaaat 39463688  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 328
Target Start/End: Complemental strand, 35891591 - 35891473
Alignment:
Q  210 ttggaatatcatttcatgagtctatatacaacctatacactagaattaatgaagaactcttcggttttacagaaaattagacatttaatttcaagtgtcc 309  Q
    |||||||||||| |||||| |||||||||||| ||| ||| | || |||| ||||| | || ||||||  | ||||||||||| |||||||||||| |||    
T  35891591 ttggaatatcatatcatgattctatatacaacatatgcaccaaaactaatcaagaagtttttggttttctacaaaattagacacttaatttcaagtctcc 35891492  T
Q  310 tctacagaattagacttca 328  Q
    |||||||||  ||||||||    
T  35891491 tctacagaaggagacttca 35891473  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 39463675 - 39463597
Alignment:
Q  72 catgattaaaaatttagtaataattttaatacatacnnnnnnnnggataatatttgtattggaataaaattattatcta 150  Q
    ||||||||||||||||||||||||||||||||||||        |   |||||||||||||||||||||||||||||||    
T  39463675 catgattaaaaatttagtaataattttaatacatacaaaaaaaagataaatatttgtattggaataaaattattatcta 39463597  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 41634206 - 41634162
Alignment:
Q  14 atataagcatttataaaatattaatatgattttaatttagaaaat 58  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||    
T  41634206 atataagcatttttaaaatactaatatgattttaatttagaaaat 41634162  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 35919980 - 35919920
Alignment:
Q  269 ttcggttttacagaaaattagacatttaatttcaagtgtcctctacagaattagacttcat 329  Q
    ||||||||||  |||||||||||| |||||||||| |||| |||||||||  |||||||||    
T  35919980 ttcggttttattgaaaattagacacttaatttcaaatgtcttctacagaaggagacttcat 35919920  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 46256733 - 46256803
Alignment:
Q  14 atataagcatttataaaatattaatatgattttaatttagaaaattaaagaatcataccatgattaaaaat 84  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||    
T  46256733 atataagcatttataaaatatcaatatgattttaatttagaaaattaaagaatcaaatcattattaaaaat 46256803  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 46035722 - 46035653
Alignment:
Q  14 atataagcatttataaaatattaatatgattttaatttagaaaattaaagaatcataccatgattaaaaat 84  Q
    ||||||||||||||||||||| |||||||||| | |||||||||||||||||||| | |||||||||||||    
T  46035722 atataagcatttataaaatatcaatatgattt-actttagaaaattaaagaatcaaatcatgattaaaaat 46035653  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 198 - 318
Target Start/End: Complemental strand, 21445863 - 21445745
Alignment:
Q  198 caattacggtttttggaatatcatttcatgagtctatatacaacctatacactagaattaatgaagaactcttcggttttacagaaaattagacatttaa 297  Q
    |||||| |||||||||||||||||||||||||||| || | ||||||||||| | | ||||| ||||||| ||  |  ||| ||||||||||||| ||||    
T  21445863 caattatggtttttggaatatcatttcatgagtctttacaaaacctatacaccaaagttaatcaagaactttttag--ttatagaaaattagacacttaa 21445766  T
Q  298 tttcaagtgtcctctacagaa 318  Q
    ||||| |||| |||| |||||    
T  21445765 tttcacgtgttctctccagaa 21445745  T

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