View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18567_low_1 (Length: 668)
Name: NF18567_low_1
Description: NF18567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18567_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 458; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 98 - 651
Target Start/End: Complemental strand, 37183204 - 37182655
Alignment:
| Q |
98 |
tgcatttataacttttttcatttaagactatgttgtctcccaagtcatgcatgacttaaccaatcactcattgaatttggttacacatattatgcacggt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
37183204 |
tgcatttataacttttttcatttaagactatgttgtctcccaagtcatgcatgacttaaccaattactcattgaatttggttacacgtattatgcacggt |
37183105 |
T |
|
| Q |
198 |
gatttgaatttccatatgaatgtggctgagtgatgtttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37183104 |
gatttgaatttccatatgaatgtggctgagtgatgtttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgtttttg |
37183005 |
T |
|
| Q |
298 |
gagtcccacgcttcctcttataaggtataagggaagattgaatttctgctgaacatagtaaaaacgccccaggtgagcattgagtcaggttcttgaagta |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37183004 |
gagtcccacgcttcctcttataaggtataagggaagattgaatttctgctgaacatagtaaaaacaccccaggtgagcattgagtcaggttcttgaagta |
37182905 |
T |
|
| Q |
398 |
gttgtgttgttatgctttgttgctcttgaagtagttgtgcttttaatcactatctggttggttgaacatctgttagaaaatttgtaggaaattgattatt |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37182904 |
gttgtgttgttatgctttgttgctcttgaagtagttgtgcttttaatcaccatctggttggttgaacatctgttagaaaatttgtaggaaattgattatt |
37182805 |
T |
|
| Q |
498 |
ctcttcctactatagatgctatatnnnnnnnnnnnntctgctgtttattccatagaacatgttgcttacttctgaataagaagtggaannnnnnnnaact |
597 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
37182804 |
ctcttcctactatagatgctata----aaaaaaaaatctgctgtttattccatagaacatgttgcttacttctgaataagaagtgaaaattttcttaact |
37182709 |
T |
|
| Q |
598 |
caaagtatagcatgatttattaattagtgtcatctatatgtttttggtccataa |
651 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37182708 |
caaagtatagcatgatttattaattagtgtcatctatatgtttttggtccataa |
37182655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 98 - 651
Target Start/End: Complemental strand, 37194336 - 37193787
Alignment:
| Q |
98 |
tgcatttataacttttttcatttaagactatgttgtctcccaagtcatgcatgacttaaccaatcactcattgaatttggttacacatattatgcacggt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
37194336 |
tgcatttataacttttttcatttaagactatgttgtctcccaagtcatgcatgacttaaccaattactcattgaatttggttacacgtattatgcacggt |
37194237 |
T |
|
| Q |
198 |
gatttgaatttccatatgaatgtggctgagtgatgtttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37194236 |
gatttgaatttccatatgaatgtggctgagtgatgtttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgtttttg |
37194137 |
T |
|
| Q |
298 |
gagtcccacgcttcctcttataaggtataagggaagattgaatttctgctgaacatagtaaaaacgccccaggtgagcattgagtcaggttcttgaagta |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
37194136 |
gagtcccacgcttcctcttataaggtataagggaagattgaatttctgctgaacatagtaaaaacaccccaggtgagcattgagtcaggttcttgaagta |
37194037 |
T |
|
| Q |
398 |
gttgtgttgttatgctttgttgctcttgaagtagttgtgcttttaatcactatctggttggttgaacatctgttagaaaatttgtaggaaattgattatt |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37194036 |
gttgtgttgttatgctttgttgctcttgaagtagttgtgcttttaatcaccatctggttggttgaacatctgttagaaaatttgtaggaaattgattatt |
37193937 |
T |
|
| Q |
498 |
ctcttcctactatagatgctatatnnnnnnnnnnnntctgctgtttattccatagaacatgttgcttacttctgaataagaagtggaannnnnnnnaact |
597 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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|
| T |
37193936 |
ctcttcctactatagatgctata----aaaaaaaaatctgctgtttattccatagaacatgttgcttacttctgaataagaagtgaaaattttcttaact |
37193841 |
T |
|
| Q |
598 |
caaagtatagcatgatttattaattagtgtcatctatatgtttttggtccataa |
651 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37193840 |
caaagtatagcatgatttattaattagtgtcatctatatgtttttggtccataa |
37193787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 37183277 - 37183372
Alignment:
| Q |
1 |
caactgttgtagatattgtggcagactcttccttcgctatggccaatctctgtttgcaagcagtctctttatcacatatttctctcaacctctctg |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37183277 |
caactgttgtagatattgtggcagactcttccttcgctatggccaatctctgtttgcaagcagtctctttatcacatatttctctcaacctctctg |
37183372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 37194409 - 37194504
Alignment:
| Q |
1 |
caactgttgtagatattgtggcagactcttccttcgctatggccaatctctgtttgcaagcagtctctttatcacatatttctctcaacctctctg |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37194409 |
caactgttgtagatattgtggcagactcttccttcgctatggccaatctctgtttgcaagcagtctctttatcacatatttctctcaacctctctg |
37194504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 37202348 - 37202427
Alignment:
| Q |
1 |
caactgttgtagatattgtggcagactcttccttcgctatggccaatctctgtttgcaagcagtctctttatcacatatt |
80 |
Q |
| |
|
|||||||| ||||||| | || |||||| ||||||||| | |||||||||| |||||||||||| |||| | |||||||| |
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|
| T |
37202348 |
caactgttatagatatcgcggtagactcatccttcgctctagccaatctctctttgcaagcagtttcttcagcacatatt |
37202427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 384 - 419
Target Start/End: Complemental strand, 37211338 - 37211303
Alignment:
| Q |
384 |
aggttcttgaagtagttgtgttgttatgctttgttg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
37211338 |
aggttcttgaagtagttgtgttgttatgctttgttg |
37211303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 418
Target Start/End: Complemental strand, 37217086 - 37216909
Alignment:
| Q |
235 |
taaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgagt---cccacgcttcctcttataaggtataaggga |
331 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| || |||||||||| || |||||||| | |||| ||||| ||||| || | |||| | ||||| |
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|
| T |
37217086 |
taaaaatgtctgcatgagatgagtggtatattttttaaaaacaaatttaccatcatgttattggagtactcccactcttccactaa--aggtgtgaggga |
37216989 |
T |
|
| Q |
332 |
agattgaatttctgctgaacatagtaaaaacgccccaggtgagcattgagtcaggttcttgaagtagttgtgttgttatgctttgtt |
418 |
Q |
| |
|
| ||| ||||||||| ||| | ||||||||| | |||||||||||| |||||||||||||||||||| |||||||||||| |
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|
| T |
37216988 |
aaattaaatttctgcagaataaagtaaaaacacta---gtgagcattgag----gttcttgaagtagttgtgtttttatgctttgtt |
37216909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 456 - 520
Target Start/End: Complemental strand, 37201853 - 37201789
Alignment:
| Q |
456 |
tggttgaacatctgttagaaaatttgtaggaaattgattattctcttcctactatagatgctata |
520 |
Q |
| |
|
|||||| ||||||||| |||||| | | ||||||||||||||||||| ||| || |||||||||| |
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|
| T |
37201853 |
tggttggacatctgtttgaaaatgtattggaaattgattattctcttgctagtagagatgctata |
37201789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 37202053 - 37201993
Alignment:
| Q |
234 |
ttaaaaatgcttgcatgagataagtggtatattta-tttaaaacaaattaacaatcatgtt |
293 |
Q |
| |
|
||||||||| ||||||||||| |||| |||||||| ||||||| |||||||| |||||||| |
|
|
| T |
37202053 |
ttaaaaatgtttgcatgagatgagtgctatatttattttaaaataaattaaccatcatgtt |
37201993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 37211495 - 37211461
Alignment:
| Q |
187 |
ttatgcacggtgatttgaatttccatatgaatgtg |
221 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37211495 |
ttatgcatggtgatttgaatttccatatgaatgtg |
37211461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 37180212 - 37180293
Alignment:
| Q |
2 |
aactgttgtagatattgtggcagactcttccttcgctatggccaatctctgtttgcaagcagtctctttatcacatatttct |
83 |
Q |
| |
|
||||||| |||||||| || |||||| | ||| ||| || |||||| | ||||||||||||||||||| ||||||||||| |
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|
| T |
37180212 |
aactgtttgagatattgaggtagactcattctttgctgcggtcaatctttctttgcaagcagtctctttaacacatatttct |
37180293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 234 - 411
Target Start/End: Complemental strand, 7527198 - 7527026
Alignment:
| Q |
234 |
ttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgagtcccacgcttcctcttataaggtataagggaag |
333 |
Q |
| |
|
|||| |||| ||||||||| | |||||||||||||||||||||||||||| || ||||| || |||| ||| ||||||| | |||||| | ||||| |
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|
| T |
7527198 |
ttaataatgtttgcatgaggtgtgtggtatatttatttaaaacaaattaaccatgatgttataggagtatcactcttcctcctctaaggtgtgtgggaaa |
7527099 |
T |
|
| Q |
334 |
attgaatttctgctgaacatagtaaaaacgccccaggtgagcattgagtcaggttcttgaagtagttgtgttgttatg |
411 |
Q |
| |
|
||| ||||||||| ||||| ||||||||| | | | |||||||||| ||||||||||||||||| |||| ||||| |
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|
| T |
7527098 |
attaaatttctgcagaacaaagtaaaaacactcta-gtgagcattg----aggttcttgaagtagttatgttcttatg |
7527026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 414835 - 414914
Alignment:
| Q |
234 |
ttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgagtcccacgcttcctc |
314 |
Q |
| |
|
||||||||| ||||||||||| | |||||||||||||| |||||||||||| || |||| || ||||||||| ||||||| |
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|
| T |
414835 |
ttaaaaatgtttgcatgagatgattggtatatttattt-aaacaaattaaccattgtgttataggagtcccactcttcctc |
414914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 651
Target Start/End: Original strand, 415114 - 415235
Alignment:
| Q |
534 |
tctgctgtttattccatagaacatgttgcttacttctgaataagaagtggaannnnnnnnaactcaaagtatagcatgatttattaatta----gtgtca |
629 |
Q |
| |
|
||||||||||||| ||||||||| ||||||| |||||||||||| |||||| |||||||| || | |||||||||||| ||| |||| | |
|
|
| T |
415114 |
tctgctgtttattgaatagaacatattgcttaattctgaataagatgtggaaataatcttaactcaaaataaatcatgatttattagttagagggtgtta |
415213 |
T |
|
| Q |
630 |
tctatatgtttttggtccataa |
651 |
Q |
| |
|
||||||| |||||||| ||||| |
|
|
| T |
415214 |
tctatatctttttggttcataa |
415235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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