View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18567_low_10 (Length: 329)
Name: NF18567_low_10
Description: NF18567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18567_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 8139099 - 8139395
Alignment:
| Q |
17 |
aatacatggctgactttggaatgatgtctcagttttgtataaatgatgaatctatgctttggaatgatggatgtctcagttttttatgtttcttgatcat |
116 |
Q |
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| T |
8139099 |
aatacatggctgactttggaattatgtctcagttttgtataaatgatgaatctatgctttggaatgatggatgtctcagttttttatgtttcttgatcat |
8139198 |
T |
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| Q |
117 |
taagtataaatcttaatcatttatgtaaaaatctttctcatttatttaaaaatcttgatcatttatttctgcaatcatgatcatttccatgaatgatgaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8139199 |
taagtataaatcttaatcatttatgtaaaaatctttctcatttatttaaaaatcttgatcatttatttctgcaatcatgatcatttctatgaatgatgaa |
8139298 |
T |
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| Q |
217 |
tctgtgtttttgaagcgcatctgttgannnnnnnnnnnnnnnnattgagtctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtct |
316 |
Q |
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| T |
8139299 |
tctgtgtttttgaagcgcatctgttgatttttttt---------tttagtctttgttactgaatgcatgcttgaatatcactgtttttggaatgatgtct |
8139389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 141 - 322
Target Start/End: Complemental strand, 7499701 - 7499529
Alignment:
| Q |
141 |
gtaaaaatctttctcatttatttaaaaatcttgatcatttatttctgcaatcatgatcatttccatgaatgatgaatctgtgtttttgaagcgcatctgt |
240 |
Q |
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| T |
7499701 |
gtaaaaatcttaatcatttatctaaaaatctttatcatttatttctgcaatcatgatcacttctatgaatgatgaatctgtg-ttttgaagctcatctgt |
7499603 |
T |
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| Q |
241 |
tgannnnnnnnnnnnnnnnattgagtctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtctctgctc |
322 |
Q |
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| T |
7499602 |
tgattttttttt--------ttgagtctttgttactgaatgcatgcttgaacatcactgtttttggaatgatgtttctgctc |
7499529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 7503107 - 7502967
Alignment:
| Q |
88 |
tgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatct---ttctcatttatttaaaaatcttgatcatttattt |
184 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| | | |||||||| ||||||| |||||||||||||| |
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| T |
7503107 |
tgtcccagttttttatgtttcttgatcattaagtaaaaatcctgatcatttatgtaaaaatatcattaatcatttatgtaaaaatattgatcatttattt |
7503008 |
T |
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| Q |
185 |
ctgcaatc--atgatcatttccatgaatgatgaatctgtgt |
223 |
Q |
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| T |
7503007 |
ctgcaatcatatgatcacttctatgaatgatgaatctgtgt |
7502967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 7502928 - 7502878
Alignment:
| Q |
266 |
tctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtct |
316 |
Q |
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| T |
7502928 |
tctttgttactgattgcatgcttggatatcactgtttttggaatgatgtct |
7502878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 7503160 - 7503119
Alignment:
| Q |
181 |
atttctgcaatcatgatcatttccatgaatgatgaatctgtg |
222 |
Q |
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| T |
7503160 |
atttctgcaatcatgatcacttctatgaatgatgaatttgtg |
7503119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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