View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18567_low_11 (Length: 312)
Name: NF18567_low_11
Description: NF18567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18567_low_11 |
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| [»] scaffold2055 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 30227542 - 30227837
Alignment:
| Q |
1 |
cattaataaatcaaagaaaccactatgtcttagctttcaaaattattaatttatgaatgaaaataaagttttagatgagtggttaaa-tattaacgtgtc |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30227542 |
cattaataaatcaaagaaaccactatgtcttagctttcaaaattattaatttatgaatgaaaataaagttttagatgagtggttaaaatattaacgtgtc |
30227641 |
T |
|
| Q |
100 |
acacacctcagacccccttaacttcatttccaaatccaagagcaaagctatgagataaacactgaaagaacgtctcttcctcttgattagttcacgagta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30227642 |
acacacctcagacccccttaacttcatttccaaatccaagagcaaagctatgagataaacactgaaagaacgtctcttcctcttgattagttcacgagta |
30227741 |
T |
|
| Q |
200 |
ttccaaacaaactcaagagggttggagatttttgattggcacatcttaggtataggtatttgtaagaaagaaattttatttccccatagacctttg |
295 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30227742 |
ttccaaacaaactcaagaggattggagatttttgattggcacatcttaggtataggtatttgtaagaaagaaattttatttccccatagacctttg |
30227837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 69 - 295
Target Start/End: Original strand, 30030984 - 30031210
Alignment:
| Q |
69 |
ttttagatgagtggttaaatattaacgtgtcacacacctcagacccccttaacttcatttccaaatccaagagcaaagctatgagataaacactgaaaga |
168 |
Q |
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|||||| ||||| ||||| ||||| |||||||||||||||| ||| |||| |||| |||||||||| |||||||||||| ||||||||||||||||| |
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| T |
30030984 |
ttttaggtgagttattaaagattaatgtgtcacacacctcaggccctcttagtctcatctccaaatccatgagcaaagctataagataaacactgaaaga |
30031083 |
T |
|
| Q |
169 |
acgtctcttcctcttgattagttcacgagtattccaaacaaactcaagagggttggagatttttgattggcacatcttaggtataggtatttgtaagaaa |
268 |
Q |
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| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||||||| |
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| T |
30031084 |
atgtctcttcctcttgattagttcacgagaattccaaacaaactcaagagggttggagattactgattggcttactttaggtattggtatttgtaagaaa |
30031183 |
T |
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| Q |
269 |
gaaattttatttccccatagacctttg |
295 |
Q |
| |
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||||||| ||||||||| ||||||||| |
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| T |
30031184 |
gaaatttgatttccccaaagacctttg |
30031210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 85 - 295
Target Start/End: Original strand, 30047271 - 30047481
Alignment:
| Q |
85 |
aaatattaacgtgtcacacacctcagacccccttaacttcatttccaaatccaagagcaaagctatgagataaacactgaaagaacgtctcttcctcttg |
184 |
Q |
| |
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||||||||| ||| ||||||||||| || ||||| |||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
30047271 |
aaatattaatgtgggacacacctcaggtcctcttaatctcatctccaaatccatgagcatagctacaagataaacactgaaagaacgtctcttcctcttg |
30047370 |
T |
|
| Q |
185 |
attagttcacgagtattccaaacaaactcaagagggttggagatttttgattggcacatcttaggtataggtatttgtaagaaagaaattttatttcccc |
284 |
Q |
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||||||||||| | ||||||||||||||||||||| ||||||||| |||||| | | |||||||| |||||||||||||||||||||| |||||||| |
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| T |
30047371 |
attagttcacgggaattccaaacaaactcaagaggattggagattactgattgacttactttaggtattggtatttgtaagaaagaaatttgatttcccc |
30047470 |
T |
|
| Q |
285 |
atagacctttg |
295 |
Q |
| |
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| ||||||||| |
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| T |
30047471 |
aaagacctttg |
30047481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 85 - 295
Target Start/End: Original strand, 30061612 - 30061822
Alignment:
| Q |
85 |
aaatattaacgtgtcacacacctcagacccccttaacttcatttccaaatccaagagcaaagctatgagataaacactgaaagaacgtctcttcctcttg |
184 |
Q |
| |
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||||||||| ||| ||||||||||| || ||||| |||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
30061612 |
aaatattaatgtgggacacacctcaggtcctcttaatctcatctccaaatccatgagcatagctacaagataaacactgaaagaacgtctcttcctcttg |
30061711 |
T |
|
| Q |
185 |
attagttcacgagtattccaaacaaactcaagagggttggagatttttgattggcacatcttaggtataggtatttgtaagaaagaaattttatttcccc |
284 |
Q |
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||||||||||| | ||||||||||||||||||||| ||||||||| |||||| | | |||||||| |||||||||||||||||||||| |||||||| |
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| T |
30061712 |
attagttcacgggaattccaaacaaactcaagaggattggagattactgattgacttactttaggtattggtatttgtaagaaagaaatttgatttcccc |
30061811 |
T |
|
| Q |
285 |
atagacctttg |
295 |
Q |
| |
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| ||||||||| |
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| T |
30061812 |
aaagacctttg |
30061822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 69 - 295
Target Start/End: Complemental strand, 30221848 - 30221634
Alignment:
| Q |
69 |
ttttagatgagtggttaaatattaacgtgtcacacacctcagacccccttaacttcatttccaaatccaagagcaaagctatgagataaacactgaaaga |
168 |
Q |
| |
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||||||||||||||||||||| | |||| ||| ||||||||||| |||| ||||| ||||||| |||||||||| ||||||||||||||| |||||| |
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| T |
30221848 |
ttttagatgagtggttaaataat---gtgtgacatacctcagacccttttaatttcatctccaaattcaagagcaaacctatgagataaacaccgaaaga |
30221752 |
T |
|
| Q |
169 |
acgtctcttcctcttgattagttcacgagtattccaaacaaactcaagagggttggagatttttgattggcacatcttaggtataggtatttgtaagaaa |
268 |
Q |
| |
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||||||||||| ||||||| | ||||| ||||||||||||||||||||| | |||||||| | ||||||||| ||||||||||||||| |
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| T |
30221751 |
gcgtctcttccttttgattaacttacgagctttccaaacaaactcaagaggg---------tctgattggcttagcttaggtattggtatttgtaagaaa |
30221661 |
T |
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| Q |
269 |
gaaattttatttccccatagacctttg |
295 |
Q |
| |
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||||||| ||||||||| |||| |||| |
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| T |
30221660 |
gaaatttgatttccccaaagacttttg |
30221634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 30047238 - 30047275
Alignment:
| Q |
28 |
tcttagctttcaaaattattaatttatgaatgaaaata |
65 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
30047238 |
tctttgctttcaaaattattaatttatgaatgaaaata |
30047275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 30061579 - 30061616
Alignment:
| Q |
28 |
tcttagctttcaaaattattaatttatgaatgaaaata |
65 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
30061579 |
tctttgctttcaaaattattaatttatgaatgaaaata |
30061616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2055 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold2055
Description:
Target: scaffold2055; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 969 - 1008
Alignment:
| Q |
28 |
tcttagctttcaaaattattaatttatgaatgaaaataaa |
67 |
Q |
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||||||||||||||||||||| ||||||||| |||||||| |
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| T |
969 |
tcttagctttcaaaattattagtttatgaataaaaataaa |
1008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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