View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18567_low_12 (Length: 303)

Name: NF18567_low_12
Description: NF18567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18567_low_12
NF18567_low_12
[»] chr8 (19 HSPs)
chr8 (21-303)||(42126230-42126512)
chr8 (21-152)||(13884488-13884619)
chr8 (22-151)||(13884706-13884835)
chr8 (21-159)||(11867899-11868036)
chr8 (21-152)||(29714541-29714672)
chr8 (21-151)||(42126601-42126731)
chr8 (21-126)||(2554067-2554172)
chr8 (23-105)||(14996678-14996761)
chr8 (21-151)||(29714759-29714889)
chr8 (32-82)||(2554002-2554052)
chr8 (32-85)||(14996608-14996661)
chr8 (32-85)||(29714691-29714744)
chr8 (21-112)||(15862541-15862632)
chr8 (54-152)||(43416262-43416360)
chr8 (25-110)||(26745959-26746044)
chr8 (32-85)||(42126532-42126585)
chr8 (25-105)||(26745309-26745389)
chr8 (35-85)||(13884638-13884688)
chr8 (21-53)||(15862422-15862454)
[»] chr7 (16 HSPs)
chr7 (21-153)||(28715640-28715772)
chr7 (21-156)||(28715859-28715994)
chr7 (39-154)||(30862215-30862330)
chr7 (21-152)||(41985909-41986040)
chr7 (21-150)||(6474281-6474411)
chr7 (21-156)||(6474498-6474632)
chr7 (21-110)||(30862437-30862526)
chr7 (21-151)||(47373462-47373594)
chr7 (21-126)||(47373679-47373784)
chr7 (79-152)||(41986183-41986256)
chr7 (35-85)||(41986058-41986108)
chr7 (32-85)||(47373612-47373665)
chr7 (25-105)||(6271188-6271268)
chr7 (25-110)||(38408121-38408206)
chr7 (25-105)||(38407478-38407558)
chr7 (25-98)||(6270272-6270345)
[»] chr1 (16 HSPs)
chr1 (21-153)||(10824586-10824718)
chr1 (21-155)||(37189565-37189699)
chr1 (21-126)||(18844484-18844589)
chr1 (21-152)||(22683140-22683271)
chr1 (21-150)||(15825738-15825865)
chr1 (26-151)||(37189368-37189492)
chr1 (33-153)||(18844677-18844798)
chr1 (21-153)||(19056368-19056500)
chr1 (23-126)||(10824393-10824496)
chr1 (21-151)||(19056150-19056280)
chr1 (21-108)||(22683358-22683445)
chr1 (33-85)||(22683290-22683342)
chr1 (32-85)||(10824514-10824567)
chr1 (32-85)||(19056295-19056348)
chr1 (35-85)||(18844608-18844658)
chr1 (39-85)||(37189495-37189541)
[»] chr4 (14 HSPs)
chr4 (21-157)||(39161282-39161418)
chr4 (21-154)||(55173470-55173603)
chr4 (21-153)||(39161504-39161636)
chr4 (21-153)||(47096798-47096928)
chr4 (33-152)||(50509357-50509476)
chr4 (32-158)||(55173327-55173454)
chr4 (152-269)||(40971173-40971289)
chr4 (21-153)||(47097017-47097146)
chr4 (21-110)||(37996106-37996195)
chr4 (32-85)||(47096947-47097001)
chr4 (152-258)||(27256836-27256941)
chr4 (33-85)||(39161436-39161488)
chr4 (25-105)||(9738164-9738243)
chr4 (259-303)||(40971060-40971104)
[»] scaffold0060 (1 HSPs)
scaffold0060 (21-152)||(22922-23053)
[»] chr2 (21 HSPs)
chr2 (21-152)||(2916377-2916508)
chr2 (21-151)||(16973064-16973194)
chr2 (21-149)||(44594455-44594583)
chr2 (33-153)||(44594246-44594367)
chr2 (21-152)||(40987656-40987787)
chr2 (21-126)||(38982774-38982879)
chr2 (21-152)||(16973281-16973412)
chr2 (33-156)||(38982552-38982675)
chr2 (33-153)||(11533673-11533794)
chr2 (21-126)||(24125876-24125975)
chr2 (21-126)||(2916594-2916699)
chr2 (21-153)||(13559519-13559650)
chr2 (21-145)||(40987863-40987987)
chr2 (21-126)||(24126146-24126245)
chr2 (32-85)||(16973213-16973266)
chr2 (32-85)||(44594383-44594436)
chr2 (21-98)||(13559357-13559434)
chr2 (32-85)||(38982702-38982755)
chr2 (32-85)||(2916526-2916579)
chr2 (32-85)||(24125804-24125857)
chr2 (84-151)||(24125670-24125737)
[»] chr6 (15 HSPs)
chr6 (25-155)||(24798843-24798973)
chr6 (25-151)||(2216799-2216925)
chr6 (21-152)||(24798624-24798755)
chr6 (21-146)||(11643754-11643879)
chr6 (32-155)||(11643977-11644099)
chr6 (21-153)||(18494732-18494862)
chr6 (57-153)||(24690353-24690449)
chr6 (21-151)||(18494949-18495079)
chr6 (65-149)||(24690607-24690691)
chr6 (32-85)||(11643898-11643951)
chr6 (202-269)||(14863175-14863243)
chr6 (34-86)||(24798770-24798822)
chr6 (32-85)||(24690504-24690557)
chr6 (25-105)||(9954853-9954933)
chr6 (25-110)||(9955590-9955675)
[»] chr3 (13 HSPs)
chr3 (21-152)||(51663467-51663598)
chr3 (21-157)||(40244619-40244756)
chr3 (21-126)||(46003465-46003570)
chr3 (21-156)||(51663245-51663380)
chr3 (21-110)||(20537967-20538056)
chr3 (21-150)||(20538151-20538280)
chr3 (21-153)||(46003246-46003378)
chr3 (21-152)||(40364040-40364171)
chr3 (32-85)||(46003393-46003446)
chr3 (40-148)||(40364194-40364301)
chr3 (39-85)||(20538076-20538122)
chr3 (89-152)||(40244873-40244936)
chr3 (32-85)||(51663399-51663452)
[»] scaffold0781 (1 HSPs)
scaffold0781 (25-151)||(5256-5382)
[»] chr5 (4 HSPs)
chr5 (21-156)||(21249357-21249492)
chr5 (202-269)||(38935551-38935619)
chr5 (35-85)||(21249511-21249561)
chr5 (21-67)||(21249579-21249625)
[»] scaffold0098 (2 HSPs)
scaffold0098 (152-269)||(46307-46423)
scaffold0098 (262-303)||(46195-46236)
[»] scaffold0034 (1 HSPs)
scaffold0034 (35-99)||(108047-108111)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 21 - 303
Target Start/End: Complemental strand, 42126512 - 42126230
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| ||| |||||||||| |||||||    
T  42126512 agagaaactaccagaaaggactaaaactagtagcgaagcaaaacatagggggccaaattgatacaaattatagttagagaatcaaattgagacaattaat 42126413  T
Q  121 taagttcagtaaccgggtgattgaataagcctaaaattatttatgtcacactaaataccaaaactcttccattttataaactttatgaaaagcaaatgat 220  Q
    |||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42126412 taagttaagggaccgggtgattgaataagcctaaaattatttatgtcacactaaataccaaaactcttccattttatgaactttatgaaaagcaaatgat 42126313  T
Q  221 attttagagaaaaccaaaattagcgcacaaaacccttcatagttgagacaattaaatcagctattttataattaaagagttat 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42126312 attttagagaaaaccaaaattagcgcacaaaacccttcatagttgagacaattaaatcagctattttataattaaagagttat 42126230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 13884619 - 13884488
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||| |||    
T  13884619 agagaaactaccagaaaagactaaaactagtaacgaagcaaaacatagggggccaaattggtacaaattatagttaggggaccaaattgagacaatcaat 13884520  T
Q  121 taagttcagtaaccgggtgattgaataagcct 152  Q
    |||||| ||  |||||||||||||||||||||    
T  13884519 taagttaagggaccgggtgattgaataagcct 13884488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 13884706 - 13884835
Alignment:
Q  22 gagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaatt 121  Q
    ||||||||| || ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||| ||| ||||    
T  13884706 gagaaactaacaaaaaggactaaaaccagtaacgaagcaaaacatagaggaccaaattggtacaaattatagttaggggactaaattgagacaatcaatt 13884805  T
Q  122 aagttcagtaaccgggtgattgaataagcc 151  Q
    ||||| ||  ||||||||||||||||||||    
T  13884806 aagttaagggaccgggtgattgaataagcc 13884835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 11867899 - 11868036
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| || ||||||||||||||||| || || |||||||||| ||||||||||| ||||||||||||||| ||||||||||||||| ||| |||    
T  11867899 agagaaactaacataaaggactaaaactagtgacaaatcaaaacatagaggaccaaattgatacaaattatagttaaggaaccaaattgagacaatcaat 11867998  T
Q  121 taagttcagtaaccgggtgattgaataagcctaaaatta 159  Q
    |||||| ||  ||| ||||||||||||||||||||||||    
T  11867999 taagttaag-gaccaggtgattgaataagcctaaaatta 11868036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 29714672 - 29714541
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| |||||| || |||| |||||||| |||||||| ||||||||||||||||||||||| ||||||| ||| |||||||||||| ||| |||    
T  29714672 agagaaactaacagaaatgattaaagctagtaacaaagcaaaatataggggaccaaattggtacaaactatagtttggggaccaaattgagacaatcaat 29714573  T
Q  121 taagttcagtaaccgggtgattgaataagcct 152  Q
    |||||| ||  |||||||||||||||||||||    
T  29714572 taagttaagggaccgggtgattgaataagcct 29714541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 42126601 - 42126731
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| |||||| |||||||| |||| ||  |||||||| ||| |||||||||||||||||||||||||||||| | |||||||||||||| |||    
T  42126601 agagaaactaacagaaatgactaaaattagtgacagagcaaaacttagaggaccaaattggtacaaattatagttaggggatcaaattgagataatcaat 42126700  T
Q  121 taagttcagtaaccgggtgattgaataagcc 151  Q
    |||||| ||  ||||||||||||||||||||    
T  42126701 taagttaagggaccgggtgattgaataagcc 42126731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 2554067 - 2554172
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| ||||||| |||||||| |||||| |||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||| ||| |||    
T  2554067 agagaaactaacagaaagaactaaaacaagtaacaaagcaaaacataggagaccaaattggaacaaattatagttaggggatcaaattgagacaatcaat 2554166  T
Q  121 taagtt 126  Q
    ||||||    
T  2554167 taagtt 2554172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 14996678 - 14996761
Alignment:
Q  23 agaaactaccagaaaggactaaaactagtaacgaagcaaaacata-ggggaccaaattggtacaaattatagttagggaaccaa 105  Q
    |||||||| ||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||| |||||| |||||    
T  14996678 agaaactaacagaaaggactaaaactagtaacaaagcaaaacatagggggatcaaattggtacaaattataattaggggaccaa 14996761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 29714759 - 29714889
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||  || ||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| || |||||||| | | ||| |||    
T  29714759 agagaaactgacataaatgactaaaactagtaatgaagcaaaacatagaggaccaaattgatacaaattatagttaagggaccaaattaaaacaatcaat 29714858  T
Q  121 taagttcagtaaccgggtgattgaataagcc 151  Q
    |||||| ||  ||| ||||||  ||||||||    
T  29714859 taagttaagggaccaggtgatcaaataagcc 29714889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 2554052 - 2554002
Alignment:
Q  32 cagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggt 82  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2554052 cagaaaggactaaaactagtaacgaagtaaaacataggggaccaaattggt 2554002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 14996661 - 14996608
Alignment:
Q  32 cagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  14996661 cagaaaagactaaaactagtaacgaagcaaaacataggggaccaaattagtaca 14996608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 29714744 - 29714691
Alignment:
Q  32 cagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    |||||||||||||||||||||||| || |||||||||| |||||||||||||||    
T  29714744 cagaaaggactaaaactagtaacggagtaaaacataggagaccaaattggtaca 29714691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 15862541 - 15862632
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgaga 112  Q
    ||||||||||   ||||| | |||||| ||||||| |||||| ||||| ||||||||||  |||||||||||||||||| | ||||||||||    
T  15862541 agagaaactaatggaaagtattaaaaccagtaacggagcaaatcatagaggaccaaattaatacaaattatagttaggggatcaaattgaga 15862632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 43416360 - 43416262
Alignment:
Q  54 cgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 152  Q
    |||| ||||||||||| ||  |||||| |||||||||||||||||| |  ||||| ||| ||| ||||||||| ||  ||||  |||||||||||||||    
T  43416360 cgaaacaaaacataggagattaaattgatacaaattatagttaggggattaaattaagacaatcaattaagttaagagaccgaatgattgaataagcct 43416262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 26745959 - 26746044
Alignment:
Q  25 aaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattga 110  Q
    |||||| ||||||||||  ||||| |||| | |||||||| ||| |||| || ||||||||||||||| |||||| ||||| ||||    
T  26745959 aaactaacagaaaggaccgaaactggtaatggagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttga 26746044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 42126585 - 42126532
Alignment:
Q  32 cagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    |||||| |||||||||||  |||| |||||||||||||||||||||||| ||||    
T  42126585 cagaaaagactaaaactaagaacggagcaaaacataggggaccaaattgataca 42126532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 26745389 - 26745309
Alignment:
Q  25 aaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaa 105  Q
    |||||| ||||||||||  ||||| |||||  |||||||| ||| |||| || ||||||||||||||| |||||| |||||    
T  26745389 aaactaacagaaaggaccgaaactggtaacagagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaa 26745309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 13884688 - 13884638
Alignment:
Q  35 aaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    |||||||||||||||| |||| ||||||||||| | || ||||||||||||    
T  13884688 aaaggactaaaactaggaacggagcaaaacataagagatcaaattggtaca 13884638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 15862454 - 15862422
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaa 53  Q
    ||||||||||||| |||||||||||||||||||    
T  15862454 agagaaactaccataaaggactaaaactagtaa 15862422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 28715772 - 28715640
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | | |||||||    
T  28715772 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattgatacaaattatagttaggaaaccaaattaaaacaattaat 28715673  T
Q  121 taagttcagtaaccgggtgattgaataagccta 153  Q
    |||||| ||  ||||||||||||||||| ||||    
T  28715672 taagttaagggaccgggtgattgaataaaccta 28715640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 28715859 - 28715994
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| |||||| ||||||||||||| ||  |||||||| ||| |||||||||||||||||||||||||||||| |||||||| ||| ||| |||    
T  28715859 agagaaactaacagaaatgactaaaactagtgactgagcaaaacttagaggaccaaattggtacaaattatagttaggggaccaaattaagacaatcaat 28715958  T
Q  121 taagttcagtaaccgggtgattgaataagcctaaaa 156  Q
    |||||| ||  ||||||| |||||||||||||||||    
T  28715959 taagttaagggaccgggtaattgaataagcctaaaa 28715994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 39 - 154
Target Start/End: Complemental strand, 30862330 - 30862215
Alignment:
Q  39 gactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggt 138  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||||||| ||  ||||  |    
T  30862330 gactaaaactagtaacaaagcaaaatataggggaccaaattggtacaaattatagttaggggaccaaattcagacaatcaattaagttaagggaccgaat 30862231  T
Q  139 gattgaataagcctaa 154  Q
    ||||||||||||||||    
T  30862230 gattgaataagcctaa 30862215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 41986040 - 41985909
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| | ||||||||||||| ||||||| |||||||||||| ||||||||||||  ||||||||||||||||| | |||||||||| ||| |||    
T  41986040 agagaaactaacggaaaggactaaaattagtaacaaagcaaaacatatgggaccaaattgaaacaaattatagttaggggatcaaattgagacaatcaat 41985941  T
Q  121 taagttcagtaaccgggtgattgaataagcct 152  Q
    |||||| ||  || ||||||||||||||||||    
T  41985940 taagttaagggactgggtgattgaataagcct 41985909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 6474411 - 6474281
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaa-cataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaa 119  Q
    |||||||||| |||||| |||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||| | |||||||||| ||| ||    
T  6474411 agagaaactaacagaaaagactaaaactagtaacaaagcaaaaacataggggaccaaattgatataaattatagttaggggatcaaattgagacaatcaa 6474312  T
Q  120 ttaagttcagtaaccgggtgattgaataagc 150  Q
    ||||||| ||  | | ||| |||||||||||    
T  6474311 ttaagttaagggatccggtaattgaataagc 6474281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 6474498 - 6474632
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| || ||||||||||||||||||||  |||||| |||| |||| ||||| ||||||| |||||||||||  |||||||| ||| ||| |||    
T  6474498 agagaaactaacataaaggactaaaactagtaacagagcaaagcataagggagcaaatcggtacaa-ttatagttaggagaccaaattaagacaatcaat 6474596  T
Q  121 taagttcagtaaccgggtgattgaataagcctaaaa 156  Q
    |||||| ||  | |||||||||||||||||||||||    
T  6474597 taagttaagggatcgggtgattgaataagcctaaaa 6474632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 30862437 - 30862526
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattga 110  Q
    |||||||||| |||||| |||||||| |||||||  ||||||||||| |||||||||||| ||||||||||||||||||||| |||||||    
T  30862437 agagaaactaacagaaaagactaaaattagtaacagagcaaaacataagggaccaaattgatacaaattatagttagggaacaaaattga 30862526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 47373594 - 47373462
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaat--tatagttagggaaccaaattgagataatta 118  Q
    |||||||||| || ||| |||||||||||| |||  ||||||||||||||||||||||||||||||||  |||| |||| | | |||||||||| ||| |    
T  47373594 agagaaactaacataaatgactaaaactagcaacagagcaaaacataggggaccaaattggtacaaattatataattagaggatcaaattgagacaatca 47373495  T
Q  119 attaagttcagtaaccgggtgattgaataagcc 151  Q
    |||||||| ||  | || |||||||||||||||    
T  47373494 attaagttaagagatcgagtgattgaataagcc 47373462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 47373679 - 47373784
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| || |||||| |||||||||||||  | ||||||||| | ||| |||||||||||||||||| |||||| |||||||||||| ||| |||    
T  47373679 agagaaactaacataaaggattaaaactagtaacacatcaaaacatatgagactaaattggtacaaattataattaggggaccaaattgagacaatcaat 47373778  T
Q  121 taagtt 126  Q
    ||||||    
T  47373779 taagtt 47373784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 41986183 - 41986256
Alignment:
Q  79 tggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 152  Q
    ||||||||||||||||||||| | |||||||||| ||  ||||||||| || ||||||||||||||||||||||    
T  41986183 tggtacaaattatagttaggggatcaaattgagacaaacaattaagttaaggaaccgggtgattgaataagcct 41986256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 41986058 - 41986108
Alignment:
Q  35 aaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    |||||||||||| ||| |||| |||||||||||||||||||||||||||||    
T  41986058 aaaggactaaaattagcaacggagcaaaacataggggaccaaattggtaca 41986108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 47373665 - 47373612
Alignment:
Q  32 cagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    |||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||    
T  47373665 cagaaacgactaaaactaataacggagcaaaacataggggactaaattggtaca 47373612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 6271188 - 6271268
Alignment:
Q  25 aaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaa 105  Q
    |||||| ||||||||||  |||||||||||| |||||||| ||  |||| || ||||||||||||||| |||||| |||||    
T  6271188 aaactaacagaaaggaccgaaactagtaacggagcaaaacttaaaggacgaatttggtacaaattatatttaggggaccaa 6271268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 38408121 - 38408206
Alignment:
Q  25 aaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattga 110  Q
    |||||| ||||||||||  ||||| |||||  |||||||| ||| |||| || ||||||||||||||| |||||| ||||| ||||    
T  38408121 aaactaacagaaaggaccgaaactggtaacagagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttga 38408206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 38407558 - 38407478
Alignment:
Q  25 aaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaa 105  Q
    |||||| ||||||||||  ||||| |||||  |||||||| ||| |||| || ||||||||||||||| |||||| |||||    
T  38407558 aaactaacagaaaggaccgaaactggtaacagagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaa 38407478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 6270345 - 6270272
Alignment:
Q  25 aaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagg 98  Q
    |||||| |||||| |||  |||||||||||| ||||| || ||| |||| || ||||||||||||||| |||||    
T  6270345 aaactaacagaaaagaccgaaactagtaacggagcaacacttagaggacgaatttggtacaaattatatttagg 6270272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 10824586 - 10824718
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||    
T  10824586 agagaaactactagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattgatacaaattatagttaggggaccaaattgagacaatcaat 10824685  T
Q  121 taagttcagtaaccgggtgattgaataagccta 153  Q
    |||||| ||  ||||| ||||||||||||||||    
T  10824686 taagttaagggaccggatgattgaataagccta 10824718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 37189565 - 37189699
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| |||    
T  37189565 agagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagataggggaccaaattgagacaatcaat 37189664  T
Q  121 taagttcagtaaccgggtgattgaataagcctaaa 155  Q
    |||||| ||  ||| |||||||||||||| |||||    
T  37189665 taagttaagggaccaggtgattgaataagtctaaa 37189699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 18844589 - 18844484
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||    
T  18844589 agagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggaccaaattgatacaaattatagttaggggaccaaattgagataatcaat 18844490  T
Q  121 taagtt 126  Q
    ||||||    
T  18844489 taagtt 18844484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 22683271 - 22683140
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||    
T  22683271 agagaaactaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattgatacaaattatagttaggggaccaaattgagacaatcaat 22683172  T
Q  121 taagttcagtaaccgggtgattgaataagcct 152  Q
    |||||| |   | |||||||||||||||||||    
T  22683171 taagttaaaggagcgggtgattgaataagcct 22683140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 15825738 - 15825865
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    ||||||||||  | ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||| |||    
T  15825738 agagaaactaataaaaaggactaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagttagg--accaaattgagacaatcaat 15825835  T
Q  121 taagttcagtaaccgggtgattgaataagc 150  Q
    |||||| ||  |||||||||||||||||||    
T  15825836 taagttaagagaccgggtgattgaataagc 15825865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 37189492 - 37189368
Alignment:
Q  26 aactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaattaagt 125  Q
    ||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |  |||||||||||| ||| ||||||||    
T  37189492 aactaacagaaaggactaaaactagtaacggagcaaaacatagaggaccaaattggtacaaattatagttatgagaccaaattgagacaatcaattaagt 37189393  T
Q  126 tcagtaaccgggtgattgaataagcc 151  Q
    | ||  ||||||||||||||||||||    
T  37189392 taag-gaccgggtgattgaataagcc 37189368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 33 - 153
Target Start/End: Original strand, 18844677 - 18844798
Alignment:
Q  33 agaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggga-accaaattgagataattaattaagttcagta 131  Q
    |||||| |||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||| ||||||||| ||      
T  18844677 agaaagaactaaaactagtaacggagcaaaacatagaggaccaaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaaggg 18844776  T
Q  132 accgggtgattgaataagccta 153  Q
    | ||||||||||||||||||||    
T  18844777 atcgggtgattgaataagccta 18844798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 19056368 - 19056500
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||  |||||| |||||||||||||||| ||||||||||||||  |||||||||||||| ||||||||||||| |||||||| | | ||| |||    
T  19056368 agagaaactgacagaaatgactaaaactagtaacaaagcaaaacataggataccaaattggtacagattatagttaggggaccaaattaaaacaatcaat 19056467  T
Q  121 taagttcagtaaccgggtgattgaataagccta 153  Q
    |||||| ||  ||||| ||||||||||||||||    
T  19056468 taagttaagggaccggatgattgaataagccta 19056500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 10824496 - 10824393
Alignment:
Q  23 agaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaatta 122  Q
    |||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| |||||| |||||||||  ||||| |||||    
T  10824496 agaaactaacagaaaggactaaaactagtaacggagcaaaacatagaggaccaaattgatacaaattataattaggggaccaaattgcaataatcaatta 10824397  T
Q  123 agtt 126  Q
    ||||    
T  10824396 agtt 10824393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 19056280 - 19056150
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| |||||| |||||||||||||||| |||||||| |||||||||||||||| ||||||||||| |||||| |||||||| | | ||| |||    
T  19056280 agagaaactaacagaaaagactaaaactagtaacaaagcaaaatataggggaccaaattgatacaaattataattaggggaccaaattaatacaatcaat 19056181  T
Q  121 taagttcagtaaccgggtgattgaataagcc 151  Q
    |||||| ||  | | ||||||||||||||||    
T  19056180 taagttaagggatcaggtgattgaataagcc 19056150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 22683358 - 22683445
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaatt 108  Q
    ||||||||||  ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | |||||||| ||||||||    
T  22683358 agagaaactaagagaaaggactaaaactagtaacggagcaaaacatagaggaccaaattggtacaaataaaagttaggggaccaaatt 22683445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 22683342 - 22683290
Alignment:
Q  33 agaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22683342 agaaaggactaaaactagtaacggagcaaaacataggggaccaaattggtaca 22683290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 10824514 - 10824567
Alignment:
Q  32 cagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    ||||||||||||||||||| |||| |||||||||||||||| ||||||||||||    
T  10824514 cagaaaggactaaaactaggaacggagcaaaacataggggatcaaattggtaca 10824567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 19056295 - 19056348
Alignment:
Q  32 cagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    |||||| |||| |||||||||||||||||||||| |||||||||||||||||||    
T  19056295 cagaaaagacttaaactagtaacgaagcaaaacacaggggaccaaattggtaca 19056348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 18844658 - 18844608
Alignment:
Q  35 aaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    |||||||||||||||| |||| || |||||||||||||| |||||||||||    
T  18844658 aaaggactaaaactaggaacggagtaaaacataggggactaaattggtaca 18844608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 37189495 - 37189541
Alignment:
Q  39 gactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    |||||||||||| |||| ||||||||| |||||||| ||||||||||    
T  37189495 gactaaaactaggaacggagcaaaacacaggggaccgaattggtaca 37189541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 39161418 - 39161282
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | | |||    
T  39161418 agagaaactttcagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattaagacattcaat 39161319  T
Q  121 taagttcagtaaccgggtgattgaataagcctaaaat 157  Q
    |||||| |   | ||||||||||||||||||||||||    
T  39161318 taagttaaaggatcgggtgattgaataagcctaaaat 39161282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 55173470 - 55173603
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| || ||| ||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||  | |||||||||| ||| |||    
T  55173470 agagaaactagcaaaaaagactaaaacaagtaacaaagcaaagcataggggaccaaattggtacaaattatagttaggagatcaaattgagacaatcaat 55173569  T
Q  121 taagttcagtaaccgggtgattgaataagcctaa 154  Q
    |||||| ||  |||||||||||||||||||||||    
T  55173570 taagttaagggaccgggtgattgaataagcctaa 55173603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 39161504 - 39161636
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| |||||||||||||||||| ||||| |||||||||||| |||| ||||||||||||||||||||||||| |||||||| | | ||| |||    
T  39161504 agagaaactaacagaaaggactaaaactaataacggagcaaaacatagaggactaaattggtacaaattatagttaggggaccaaattaaaacaatcaat 39161603  T
Q  121 taagttcagtaaccgggtgattgaataagccta 153  Q
    |||||| || |||||| || |||||||||||||    
T  39161604 taagttaaggaaccggatggttgaataagccta 39161636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 47096928 - 47096798
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||| | || ||||||||||||| |||||||||||||||||||||||  |||||||||||||||||| ||||||| |||||||||||||||| |||    
T  47096928 agagaaacaaacataaaggactaaaacaagtaacgaagcaaaacatagggg-gcaaattggtacaaattat-gttaggggaccaaattgagataatcaat 47096831  T
Q  121 taagttcagtaaccgggtgattgaataagccta 153  Q
    |||||| ||  | | ||||||||||||||||||    
T  47096830 taagttaagggatcaggtgattgaataagccta 47096798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 152
Target Start/End: Original strand, 50509357 - 50509476
Alignment:
Q  33 agaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaa 132  Q
    ||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||||||| ||  |    
T  50509357 agaaaagactaaaattagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaaggga 50509456  T
Q  133 ccgggtgattgaataagcct 152  Q
     | | |||||||||||||||    
T  50509457 tcagatgattgaataagcct 50509476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 158
Target Start/End: Complemental strand, 55173454 - 55173327
Alignment:
Q  32 cagaaaggactaaaactagtaacgaagcaaaacatagggg-accaaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagt 130  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||  |||||||||||||||||| |||||||| ||| ||| ||||||||| ||     
T  55173454 cagaaaggactaaaactagtaacggagcaaaatatagggggaccaaattaatacaaattatagttaggggaccaaattaagacaatcaattaagttaagg 55173355  T
Q  131 aaccgggtgattgaataagcctaaaatt 158  Q
    |||||| |||| ||||||||| ||||||    
T  55173354 aaccggatgatcgaataagccaaaaatt 55173327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 152 - 269
Target Start/End: Complemental strand, 40971289 - 40971173
Alignment:
Q  152 taaaattatttatgtcacactaaataccaaaactcttccattttataaactttatgaaaagcaaatgatatttt-agagaaaaccaaaattagcgcacaa 250  Q
    ||||| ||||||||||||||||||||| ||||| ||| |||| ||| ||||||  ||||| ||||||||||||| ||||||||| ||| |||||||||||    
T  40971289 taaaaatatttatgtcacactaaatactaaaaccctttcattgtatgaacttt--gaaaaccaaatgatatttttagagaaaacaaaagttagcgcacaa 40971192  T
Q  251 aacccttcatagttgagac 269  Q
    |||||||||||||||||||    
T  40971191 aacccttcatagttgagac 40971173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 47097017 - 47097146
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| || ||| |||||||||||||||||  |||||||||||   | |||||||||||||||||||||||| | || ||||||||| ||| |||    
T  47097017 agagaaactaacaaaaatgactaaaactagtaacggggcaaaacatag---atcaaattggtacaaattatagttagaggactaaattgagacaatcaat 47097113  T
Q  121 taagttcagtaaccgggtgattgaataagccta 153  Q
    |||||| ||  | ||| ||||||||||||||||    
T  47097114 taagttaagagatcggatgattgaataagccta 47097146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 37996195 - 37996106
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattga 110  Q
    ||||||||||  | ||| ||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||| || ||||||||||    
T  37996195 agagaaactaataaaaaagactaaaactaataacaaagcaaaacataggggaccaaattgatacaaattatagttaagggaccaaattga 37996106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 47097001 - 47096947
Alignment:
Q  32 cagaaaggactaaaactagtaacgaagcaaaacata-ggggaccaaattggtaca 85  Q
    |||||||||||||||||||||| | ||||||||||| ||||||||||||||||||    
T  47097001 cagaaaggactaaaactagtaatggagcaaaacatagggggaccaaattggtaca 47096947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 27256941 - 27256836
Alignment:
Q  152 taaaattatttatgtcacactaaataccaaaactcttccattttataaactttatgaaaagcaaatgatatttt-agagaaaaccaaaattagcgcacaa 250  Q
    ||||| |||||||||||||||| |||  | ||| ||| |||| ||| ||||||  ||||| ||||||||||||| ||||||||| ||| |||||||||||    
T  27256941 taaaaatatttatgtcacactagatattataaccctttcattgtatgaacttt--gaaaaccaaatgatatttttagagaaaacaaaagttagcgcacaa 27256844  T
Q  251 aacccttc 258  Q
    || |||||    
T  27256843 aatccttc 27256836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 39161488 - 39161436
Alignment:
Q  33 agaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    |||||||||||||||||| |||| | ||||||||| |||||||||||||||||    
T  39161488 agaaaggactaaaactaggaacggatcaaaacatatgggaccaaattggtaca 39161436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 9738243 - 9738164
Alignment:
Q  25 aaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaa 105  Q
    |||||| || |||||||  ||||| |||||| |||||||| ||| |||| || ||||||||||||||| |||||| |||||    
T  9738243 aaactaacaaaaaggaccgaaact-gtaacggagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaa 9738164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 40971104 - 40971060
Alignment:
Q  259 atagttgagacaattaaatcagctattttataattaaagagttat 303  Q
    ||||||| ||||||||||||| | ||||||||||| |||||||||    
T  40971104 atagttgtgacaattaaatcaaccattttataattgaagagttat 40971060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 22922 - 23053
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||| |||||||| ||| ||| |||    
T  22922 agagaaactaacagaaaggactaaaactagtaacggagcaaaacatagaggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaat 23021  T
Q  121 taagttcagtaaccgggtgattgaataagcct 152  Q
    |||||| ||  |||||||||||||||||||||    
T  23022 taagttaagggaccgggtgattgaataagcct 23053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 2916508 - 2916377
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| |||    
T  2916508 agagaaactaacagaaaggattaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagacaatcaat 2916409  T
Q  121 taagttcagtaaccgggtgattgaataagcct 152  Q
    |||||| ||  | |||||||||||||||||||    
T  2916408 taagttaagagatcgggtgattgaataagcct 2916377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 16973194 - 16973064
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| ||| |||    
T  16973194 agagaaactaacagaaagaattaaaactagtaacgaagcaaaacataggggaccaaattggtacaaactatagttaggggaccaaattaagacaatcaat 16973095  T
Q  121 taagttcagtaaccgggtgattgaataagcc 151  Q
    |||||| ||  ||||||||||||||||||||    
T  16973094 taagttaagggaccgggtgattgaataagcc 16973064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 44594455 - 44594583
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||| |||||||||||| ||| |||    
T  44594455 agagaaactaccagaaatgactaaaactagtaacgaagcaaaacataatggaccaaattgatacaaattatagttaggggaccaaattgagacaatcaat 44594554  T
Q  121 taagttcagtaaccgggtgattgaataag 149  Q
    ||| || |   ||||||||||||||||||    
T  44594555 taaattaaaggaccgggtgattgaataag 44594583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 44594367 - 44594246
Alignment:
Q  33 agaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggga-accaaattgagataattaattaagttcagta 131  Q
    |||||| |||||||||||||||  |||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||| ||||||||| ||      
T  44594367 agaaagaactaaaactagtaacagagcaaaacatagaggaccaaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaaggg 44594268  T
Q  132 accgggtgattgaataagccta 153  Q
    ||||||||||||||||||||||    
T  44594267 accgggtgattgaataagccta 44594246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 40987787 - 40987656
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| || ||| |||||||||||||||| || ||||||||| | ||| |||||||||||||||||||||||||||||||||||||| ||| |||    
T  40987787 agagaaactaacataaaagactaaaactagtaacaaatcaaaacatatgagactaaattggtacaaattatagttagggaaccaaattgagacaatcaat 40987688  T
Q  121 taagttcagtaaccgggtgattgaataagcct 152  Q
    |||||| ||  ||||| ||||| |||||||||    
T  40987687 taagttaagggaccggatgattaaataagcct 40987656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 38982774 - 38982879
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||| || ||||||||| ||||||||||||||| || |||||||||||| ||| |||    
T  38982774 agagaaactaccagaaatgactaaaactagtaatgaagcaaaacataaggaaccaaattgatacaaattatagttaagggaccaaattgagacaatcaat 38982873  T
Q  121 taagtt 126  Q
    ||||||    
T  38982874 taagtt 38982879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 16973281 - 16973412
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||  |||||| ||||||||||||||| | |||||||||||| |||||||||||  ||||||||||||||||| |||||||||||| ||| |||    
T  16973281 agagaaactgacagaaatgactaaaactagtaatggagcaaaacatagaggaccaaattgacacaaattatagttaggggaccaaattgagacaatcaat 16973380  T
Q  121 taagttcagtaaccgggtgattgaataagcct 152  Q
    |||||| ||  |||  ||||||||||||||||    
T  16973381 taagttaagggaccatgtgattgaataagcct 16973412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 156
Target Start/End: Complemental strand, 38982675 - 38982552
Alignment:
Q  33 agaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaa 132  Q
    |||||||||||||||||| ||||||||||||||||   |||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| |   |    
T  38982675 agaaaggactaaaactagcaacgaagcaaaacataaatgaccaaattggtacaaattatagttagggagccaaattgagacaatcaattaagttaaagga 38982576  T
Q  133 ccgggtgattgaataagcctaaaa 156  Q
     ||||||||||| |||||| ||||    
T  38982575 tcgggtgattgattaagccaaaaa 38982552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 33 - 153
Target Start/End: Original strand, 11533673 - 11533794
Alignment:
Q  33 agaaaggactaaaactagtaacgaagcaaaacatagggg-accaaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagta 131  Q
    ||||| |||||||||||||||  |||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| ||| | ||||||| ||      
T  11533673 agaaatgactaaaactagtaataaagcaaaacatagggggaccaaattggtacaaattatagttgggggaccaaattgagacaatcacttaagttaagag 11533772  T
Q  132 accgggtgattgaataagccta 153  Q
    ||| | ||||||||||||||||    
T  11533773 acctgatgattgaataagccta 11533794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 24125876 - 24125975
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| ||||||| |||||||||||      ||||||||||| ||||||||||||||||||||||||||||||  |||||||||||| |||||||    
T  24125876 agagaaactaacagaaagaactaaaactag------agcaaaacataagggaccaaattggtacaaattatagttaggagaccaaattgagaaaattaat 24125969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 2916594 - 2916699
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| |||||||||| ||||||||||||  ||||||| |||| ||| ||| ||||||||||| |||||||||| |||||||||||| ||| |||    
T  2916594 agagaaactaacagaaaggaccaaaactagtaacagagcaaaatatagaggatcaagttggtacaaataatagttaggggaccaaattgagacaatcaat 2916693  T
Q  121 taagtt 126  Q
    ||||||    
T  2916694 taagtt 2916699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 13559519 - 13559650
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| || ||| ||||||| ||||||||  |||||| || | |||||||| ||| ||||||||||||||||||||||||||||| | ||| |||    
T  13559519 agagaaactaacataaatgactaaatctagtaacagagcaaagcacaagggaccaa-ttgatacaaattatagttagggaaccaaattgaaacaatcaat 13559617  T
Q  121 taagttcagtaaccgggtgattgaataagccta 153  Q
    |||||| ||  ||||| ||||||||||||||||    
T  13559618 taagttaagggaccggatgattgaataagccta 13559650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 40987863 - 40987987
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| |||||| |||||||| ||| ||   ||||||| |||||||||||||||  |||||||||||||||| | | |||||||||| |||||||    
T  40987863 agagaaactaacagaaatgactaaaattagcaatagagcaaaatataggggaccaaattaatacaaattatagttagaggatcaaattgagacaattaat 40987962  T
Q  121 taagttcagtaaccgggtgattgaa 145  Q
    |||||| ||  ||||||||||||||    
T  40987963 taagttaagagaccgggtgattgaa 40987987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 24126146 - 24126245
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| || ||||||||||||||||      ||||||||||| ||||||||||||||||||||||||||||||  |||||||||||| ||| |||    
T  24126146 agagaaactaacataaaggactaaaactag------agcaaaacataagggaccaaattggtacaaattatagttaggagaccaaattgagaaaatcaat 24126239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 16973266 - 16973213
Alignment:
Q  32 cagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16973266 cagaaaggactaaaactagtaacggagcaaaacataggggaccaaattggtaca 16973213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 44594383 - 44594436
Alignment:
Q  32 cagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    ||||||||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  44594383 cagaaaggactaaaactaggaacggagcaaaacataggggactaaattggtaca 44594436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 13559434 - 13559357
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagg 98  Q
    |||||||||| |||||| ||||||||||| |||| || ||||| ||| | ||||||||||  ||||||||||||||||    
T  13559434 agagaaactaacagaaatgactaaaactaataacaaaacaaaatatatgagaccaaattgaaacaaattatagttagg 13559357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 38982702 - 38982755
Alignment:
Q  32 cagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    |||||||||||||||| || |||| ||||||||||| |||||||||||||||||    
T  38982702 cagaaaggactaaaaccaggaacggagcaaaacataagggaccaaattggtaca 38982755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 2916579 - 2916526
Alignment:
Q  32 cagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    |||||| ||||||||||| ||||| |||||||  ||||||||||||||||||||    
T  2916579 cagaaaagactaaaactaataacggagcaaaatgtaggggaccaaattggtaca 2916526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 24125804 - 24125857
Alignment:
Q  32 cagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    |||||| ||||||||||| ||||  |||||||||||||||||||||||| ||||    
T  24125804 cagaaatgactaaaactaataacagagcaaaacataggggaccaaattgataca 24125857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 24125737 - 24125670
Alignment:
Q  84 caaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcc 151  Q
    |||||||||||||||| | |||||||||| ||| ||||||||| ||  ||||| ||| ||||||||||    
T  24125737 caaattatagttaggggatcaaattgagacaatcaattaagttaagggaccggttgagtgaataagcc 24125670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 24798843 - 24798973
Alignment:
Q  25 aaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaattaag 124  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||| ||| ||| ||||||     
T  24798843 aaactactagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattgatacaaattatagttaggggatcaaattaagacaatcaattaat 24798942  T
Q  125 ttcagtaaccgggtgattgaataagcctaaa 155  Q
    || ||  | ||||||||||||||||||||||    
T  24798943 ttaagggatcgggtgattgaataagcctaaa 24798973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 2216799 - 2216925
Alignment:
Q  25 aaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaattaag 124  Q
    |||||| || ||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  2216799 aaactaacataaatgactaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaag 2216898  T
Q  125 ttcagtaaccgggtgattgaataagcc 151  Q
    || ||  ||||| ||||||||||||||    
T  2216899 ttaagggaccggatgattgaataagcc 2216925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 24798755 - 24798624
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| | ||  |||    
T  24798755 agagaaactaacagaaatgactaaaactagtaacgaagcaaaacatagaggaccaaattggtacaaattatagtcaggggaccaaattgaaacaaccaat 24798656  T
Q  121 taagttcagtaaccgggtgattgaataagcct 152  Q
    |||||| ||  ||||  | |||||||||||||    
T  24798655 taagttaagggaccgaataattgaataagcct 24798624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 11643879 - 11643754
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| |||| |||||||||||||||||| || |||||||||||| ||||||||| |||||||||||||||||| | |||||||||| ||| |||    
T  11643879 agagaaactaacagagaggactaaaactagtaacaaaacaaaacatagggaaccaaattgatacaaattatagttaggggatcaaattgagacaatcaat 11643780  T
Q  121 taagttcagtaaccgggtgattgaat 146  Q
    ||| || ||  |||||||||||||||    
T  11643779 taaattaagggaccgggtgattgaat 11643754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 155
Target Start/End: Original strand, 11643977 - 11644099
Alignment:
Q  32 cagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggga-accaaattgagataattaattaagttcagt 130  Q
    |||||| |||||||||||||||| ||| ||||||||||| ||||||||| ||||||||||||||||||  |||||||||||| ||| ||||||||| ||     
T  11643977 cagaaaagactaaaactagtaacaaag-aaaacataggg-accaaattgatacaaattatagttagggggaccaaattgagacaatcaattaagttaagg 11644074  T
Q  131 aaccgggtgattgaataagcctaaa 155  Q
     ||||||||||||||||||||||||    
T  11644075 gaccgggtgattgaataagcctaaa 11644099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 18494862 - 18494732
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| || |||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| ||||| |||||||||||| ||| |||    
T  18494862 agagaaactaacaaaaaggactaaaactagtaacaaagcaaa-cataggggaccaaaatggtacaaattatagctaggg-accaaattgagacaatcaat 18494765  T
Q  121 taagttcagtaaccgggtgattgaataagccta 153  Q
     ||||| ||  |||  |||||||||||||||||    
T  18494764 aaagttaagggaccatgtgattgaataagccta 18494732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 24690449 - 24690353
Alignment:
Q  57 agcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 153  Q
    |||||||||||| ||||||||||||||||||||||||| |||| |||||||||||| ||| ||||||||| ||  ||||||||||||||||||||||    
T  24690449 agcaaaacatagaggaccaaattggtacaaattatagtaaggggaccaaattgagacaatcaattaagttaagagaccgggtgattgaataagccta 24690353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 18494949 - 18495079
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| ||||||| |||||||||| ||||| | ||||| |||||||||||||||| ||||||||||||||| || | |||||| | ||||| |||    
T  18494949 agagaaactaacagaaagaactaaaactaataacggatcaaaatataggggaccaaattgatacaaattatagttaagggatcaaattaatataatcaat 18495048  T
Q  121 taagttcagtaaccgggtgattgaataagcc 151  Q
    |||||| ||  ||  | ||||||||||||||    
T  18495049 taagttaagggactagatgattgaataagcc 18495079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 24690607 - 24690691
Alignment:
Q  65 ataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataag 149  Q
    |||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||||| ||  | ||||||||||||||||    
T  24690607 ataggggaccaaattggtacaaattatagttagggaaccaaattaaaacaatcaattaagttaagggatcgggtgattgaataag 24690691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 11643951 - 11643898
Alignment:
Q  32 cagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  11643951 cagaaatgactaaaactagtaacggagcaaaacataggggaccaaattggtaca 11643898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 14863243 - 14863175
Alignment:
Q  202 tttatgaaaagcaaatgatatttt-agagaaaaccaaaattagcgcacaaaacccttcatagttgagac 269  Q
    |||||||||| ||||||| ||||| ||| ||||||||||||||| ||||||||||||||||||| ||||    
T  14863243 tttatgaaaaccaaatgacatttttagataaaaccaaaattagcacacaaaacccttcatagttaagac 14863175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 24798770 - 24798822
Alignment:
Q  34 gaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaa 86  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  24798770 gaaaggactaaaactaggaacggagcaaaacataggggaccaaattgatacaa 24798822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 24690504 - 24690557
Alignment:
Q  32 cagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    |||||||||||||||||| |||   ||||||||||||| |||||||||||||||    
T  24690504 cagaaaggactaaaactattaatagagcaaaacataggagaccaaattggtaca 24690557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 9954933 - 9954853
Alignment:
Q  25 aaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaa 105  Q
    |||||| || |||||||  ||||| |||||| |||||||| ||| |||| || ||||||||||||||| |||||| |||||    
T  9954933 aaactaacataaaggaccgaaactggtaacggagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaa 9954853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 9955590 - 9955675
Alignment:
Q  25 aaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattga 110  Q
    |||||| ||||||||||  ||||| |||||  |||||||| ||| |||  || ||||||||||||||| |||||| ||||| ||||    
T  9955590 aaactaacagaaaggaccgaaactggtaacagagcaaaacttagaggatgaatttggtacaaattatatttaggggaccaatttga 9955675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 51663467 - 51663598
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| |||||| ||||||||||||||||  |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||| ||| |||    
T  51663467 agagaaactaacagaaatgactaaaactagtaacatagcaaaacatagaggaccaaattgctacaaattatagttaggggaccaaattgagacaatcaat 51663566  T
Q  121 taagttcagtaaccgggtgattgaataagcct 152  Q
    |||||| ||  ||||| |||||||||||||||    
T  51663567 taagttaagggaccggatgattgaataagcct 51663598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 40244756 - 40244619
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacatagggga-ccaaattggtacaaattatagttagggaaccaaattgagataattaa 119  Q
    |||||||||| |||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| || |||||||||||| ||| ||    
T  40244756 agagaaactaacagaaatgactaaaactagtaacaaagcaaaacataggggaaccaaattggtacaaattatagttaagggaccaaattgagacaatcaa 40244657  T
Q  120 ttaagttcagtaaccgggtgattgaataagcctaaaat 157  Q
    ||||||| ||  | ||| ||||||||||||||| ||||    
T  40244656 ttaagttaagggatcggatgattgaataagcctgaaat 40244619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 46003465 - 46003570
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||| |||||||||||| ||| |||    
T  46003465 agagaaactaccagaaaggactaaaactagtaatgaagcaaaacaaaggggatcaaattggtacaaattttagttaggggaccaaattgagacaatcaat 46003564  T
Q  121 taagtt 126  Q
    ||||||    
T  46003565 taagtt 46003570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 51663380 - 51663245
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| | |||| ||| | | ||| |||    
T  51663380 agagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggactaaattgatacaaattatagttagtggaccatattaaaacaatcaat 51663281  T
Q  121 taagttcagtaaccgggtgattgaataagcctaaaa 156  Q
    |||||| ||  ||||||||||| |||||||| ||||    
T  51663280 taagttaagagaccgggtgattaaataagccaaaaa 51663245  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 20538056 - 20537967
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattga 110  Q
    ||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||    
T  20538056 agagaaactaatagaaaggactaaaactagtaatgaagcaaaacataggggaccaaattggaacaaattatagttaggggatcaaattga 20537967  T

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Target: chr3; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 20538151 - 20538280
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| |||||| ||||||||||||||||| ||||||||||||   || |||||| |||||||||||||||||| | |||||||||| ||| |||    
T  20538151 agagaaactaacagaaatgactaaaactagtaacggagcaaaacatagataactaaattgatacaaattatagttaggggatcaaattgagacaatcaat 20538250  T
Q  121 taagttcagtaaccgggtgattgaataagc 150  Q
    ||| || |   |||||||||||||||||||    
T  20538251 taaattaaaggaccgggtgattgaataagc 20538280  T

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Target: chr3; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 46003378 - 46003246
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| || |||||||||||||| |||||  | || ||||||| ||||||||||| |||||||||||||||||| |||||||| | | ||| |||    
T  46003378 agagaaactaacaaaaaggactaaaacttgtaacagaacagaacatagaggaccaaattgatacaaattatagttaggggaccaaattaaaacaatcaat 46003279  T
Q  121 taagttcagtaaccgggtgattgaataagccta 153  Q
    |||||| |   ||||||||||||||||| ||||    
T  46003278 taagttaaaggaccgggtgattgaataaaccta 46003246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 40364171 - 40364040
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| || ||| ||||||||||| ||||| ||||||| | |||||| ||||||| ||||||||||| ||| || |||||||| ||||||| |||    
T  40364171 agagaaactaacaaaaatgactaaaactaataacggagcaaaatacaggggatcaaattgatacaaattataattatgggaccaaattaagataatcaat 40364072  T
Q  121 taagttcagtaaccgggtgattgaataagcct 152  Q
    |||||| ||  |  ||||||| ||||||||||    
T  40364071 taagttaagggattgggtgatcgaataagcct 40364040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 46003393 - 46003446
Alignment:
Q  32 cagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46003393 cagaaaggactaaaactagtaacgaagcaaaacatagaggaccaaattggtaca 46003446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 40364194 - 40364301
Alignment:
Q  40 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtg 139  Q
    |||||||||||||||| | |||||||||||| | |||||||||||||||||||||||||  |||||||||| | ||| ||||||||| ||  |||  |||    
T  40364194 actaaaactagtaacggaacaaaacataggg-atcaaattggtacaaattatagttaggagaccaaattgaaacaatcaattaagttaagggaccaagtg 40364292  T
Q  140 attgaataa 148  Q
    |||||||||    
T  40364293 attgaataa 40364301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 20538122 - 20538076
Alignment:
Q  39 gactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||    
T  20538122 gactaaaactaataacaaagcaaaacataggggaccaaattggtaca 20538076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 40244873 - 40244936
Alignment:
Q  89 tatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 152  Q
    ||||||||||| |||||||||||| ||| ||||||||| ||  || ||||||||||||||||||    
T  40244873 tatagttaggggaccaaattgagacaatcaattaagttaagggacggggtgattgaataagcct 40244936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 51663452 - 51663399
Alignment:
Q  32 cagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    |||||| |||||||||||| |||  ||||||||||||||||||||||| |||||    
T  51663452 cagaaatgactaaaactaggaacagagcaaaacataggggaccaaattagtaca 51663399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 5256 - 5382
Alignment:
Q  25 aaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaattaag 124  Q
    |||||| || ||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  5256 aaactaacataaatgactaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaag 5355  T
Q  125 ttcagtaaccgggtgattgaataagcc 151  Q
    || ||  ||||| ||||||||||||||    
T  5356 ttaagggaccggatgattgaataagcc 5382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 21249492 - 21249357
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggaaccaaattgagataattaat 120  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| |||||||||||| ||| |||    
T  21249492 agagaaactaacagaaaggattaaaactagtaacgaagcaaaacataggggactaaattggtacaatttataattaggggaccaaattgagacaatcaat 21249393  T
Q  121 taagttcagtaaccgggtgattgaataagcctaaaa 156  Q
    || | | ||  ||| |||||||||||||||| ||||    
T  21249392 tacggtaagggaccaggtgattgaataagccgaaaa 21249357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 38935551 - 38935619
Alignment:
Q  202 tttatgaaaagcaaatgatat-tttagagaaaaccaaaattagcgcacaaaacccttcatagttgagac 269  Q
    |||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  38935551 tttatgaaaaccaaatgatatgtttagagaaaaccaaaattagcacacaaaacccttcatagttgagac 38935619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 21249561 - 21249511
Alignment:
Q  35 aaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 85  Q
    ||||||||||||||||||||  ||||||||||| |||||||||||||||||    
T  21249561 aaaggactaaaactagtaacagagcaaaacataagggaccaaattggtaca 21249511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 21249579 - 21249625
Alignment:
Q  21 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacata 67  Q
    |||||||||| |||||||||||||||||| ||||| |||||||||||    
T  21249579 agagaaactaacagaaaggactaaaactaataacggagcaaaacata 21249625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 152 - 269
Target Start/End: Complemental strand, 46423 - 46307
Alignment:
Q  152 taaaattatttatgtcacactaaataccaaaactcttccattttataaactttatgaaaagcaaatgata-ttttagagaaaaccaaaattagcgcacaa 250  Q
    ||||| |||||||||||| |||||||| ||||||||| |||| ||| ||||||  ||||| ||||||||| ||||||||||||| ||| |||||||||||    
T  46423 taaaaatatttatgtcacgctaaatactaaaactctttcattgtatgaacttt--gaaaaccaaatgataattttagagaaaacaaaagttagcgcacaa 46326  T
Q  251 aacccttcatagttgagac 269  Q
    |||||||||||||||||||    
T  46325 aacccttcatagttgagac 46307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 46236 - 46195
Alignment:
Q  262 gttgagacaattaaatcagctattttataattaaagagttat 303  Q
    |||| ||||||||||||||| |||||||||||||||||||||    
T  46236 gttgtgacaattaaatcagccattttataattaaagagttat 46195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 108111 - 108047
Alignment:
Q  35 aaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggg 99  Q
    ||||||||||||||||||| | ||||||||| || ||||||||||| |||||||||| |||||||    
T  108111 aaaggactaaaactagtaatggagcaaaacacagaggaccaaattgatacaaattatggttaggg 108047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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