View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18567_low_14 (Length: 297)
Name: NF18567_low_14
Description: NF18567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18567_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 39989908 - 39989629
Alignment:
| Q |
1 |
tagccacattttcatacttcacttaggtgaatgttctaagcatagagttgattgatttagcatgagatgatgcttgcttgctatttatcttgtttatgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39989908 |
tagccacattttcatacttcacttaggtgaatgttctaagcatagagttgattgatttagcatgagatgatgcttgcttgctatttatcttgtttatgat |
39989809 |
T |
|
| Q |
101 |
cataatttgatagattctttgttgtttgactagattgactttagagtttagtcttttatagataaatctgtttgtacttgcaaatttaatttaactgggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39989808 |
cataatttgatagattctttgttgtttgactagattgactttagagtttagtcttttatagataaatctgtttgtacttgcaaatttaatttaactgggg |
39989709 |
T |
|
| Q |
201 |
tcagagttgtttgttcttgagttcaatccaaaatctaacacattatatttaaatctatcttagatttgttacgagtcatt |
280 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39989708 |
tcagagttgtttgttgttgagttcaatccaaaatctaacacattatatttaaatctatcttagatttgttacgagtcatt |
39989629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University