View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18567_low_15 (Length: 290)
Name: NF18567_low_15
Description: NF18567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18567_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 3725882 - 3726005
Alignment:
| Q |
18 |
aatataataattcaatgttgcagaacaagtagttatgaatctctacaatatccttcaaaatcatttaggttcaaacccattgcaatgaaaaatatcagtt |
117 |
Q |
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| T |
3725882 |
aatataatgatttaatgttgcagaacaagtagttgtgaatctctacaatatccttcaaaatcatttaggttcaaacccattgaaatgtaaaatatcagtt |
3725981 |
T |
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| Q |
118 |
actcacagtgatcattataactgg |
141 |
Q |
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| T |
3725982 |
actcacagtgatcatcataactgg |
3726005 |
T |
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Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 198 - 275
Target Start/End: Original strand, 3726060 - 3726137
Alignment:
| Q |
198 |
ggtacctattagtgaataacattccagcacaaaagctagccaaacaaagaaaaagagtccatttactatgtaccacag |
275 |
Q |
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| T |
3726060 |
ggtacctattagtgaataacattccagcacaaaagctagccaaacaaagaaaaagagcccatttactatgtaccacag |
3726137 |
T |
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