View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18567_low_17 (Length: 245)
Name: NF18567_low_17
Description: NF18567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18567_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 42991291 - 42991525
Alignment:
| Q |
5 |
tgcagattcttggttgacaacatcccaataaggatcttcaagaatgctgaatcgattggtattcctttcccaaagaaccaaccaatgagaatatattcaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42991291 |
tgcagattcttggttgacaacatcccaataaggatcttcaagaatgctgaatctattagtattcctttcccaaagaaccaaccgatgagaatatattcaa |
42991390 |
T |
|
| Q |
105 |
gtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttcaaagctac |
204 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42991391 |
gtctttggaacgctgaagattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttcaaagctac |
42991490 |
T |
|
| Q |
205 |
tgaattatcctctgtctcttccacttcctcctctgat |
241 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
42991491 |
tgaattatc--ctgtctcttccacttccttctctgat |
42991525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 35017979 - 35018172
Alignment:
| Q |
5 |
tgcagattcttggttgacaacatcccaataaggatcttcaagaatgctgaatcgattggtattcctttcccaaagaaccaaccaatgagaatatattcaa |
104 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| | |||||||||| |||||| |||||| ||||||| ||||||||||||||||||||||| ||||| | |
|
|
| T |
35017979 |
tgcagattcttggttgataacatgccaataagggtattcaagaatgttgaatctattggtgttccttttccaaagaaccaaccaatgagaatctattcca |
35018078 |
T |
|
| Q |
105 |
gtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttcaa |
198 |
Q |
| |
|
| || ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
35018079 |
gcctgtggaatgctgatgattgggccacaagaggtggattggtgaaaactgattggtccaaagcaccctttacagcatactaccgtaatttcaa |
35018172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 38214214 - 38213978
Alignment:
| Q |
5 |
tgcagattcttggttgacaacatcccaataaggatcttcaagaatgctgaatcgattggtattcctttcccaaagaaccaaccaatgagaatatattcaa |
104 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
38214214 |
tgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaa |
38214115 |
T |
|
| Q |
105 |
gtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttcaaagctac |
204 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38214114 |
gtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttcaaagctac |
38214015 |
T |
|
| Q |
205 |
tgaattatcctctgtctcttccacttcctcctctgat |
241 |
Q |
| |
|
||| ||||| ||||||||||||||||||| ||||||| |
|
|
| T |
38214014 |
tgagttatcttctgtctcttccacttccttctctgat |
38213978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 38218433 - 38218197
Alignment:
| Q |
5 |
tgcagattcttggttgacaacatcccaataaggatcttcaagaatgctgaatcgattggtattcctttcccaaagaaccaaccaatgagaatatattcaa |
104 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
38218433 |
tgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaa |
38218334 |
T |
|
| Q |
105 |
gtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttcaaagctac |
204 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38218333 |
gtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttcaaagctac |
38218234 |
T |
|
| Q |
205 |
tgaattatcctctgtctcttccacttcctcctctgat |
241 |
Q |
| |
|
||| ||||| ||||||||||||||||||| ||||||| |
|
|
| T |
38218233 |
tgagttatcttctgtctcttccacttccttctctgat |
38218197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 53495383 - 53495451
Alignment:
| Q |
74 |
ccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggt |
142 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
53495383 |
ccaaagaatcaaccaatgaggatatattcaagtctatggaatgctgatgattgggcaacaagaggtggt |
53495451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 53488758 - 53488672
Alignment:
| Q |
74 |
ccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattgg |
160 |
Q |
| |
|
|||||||| || ||||||||| ||||||||||||| ||||| || ||||||||||| |||||||||||| | |||||||| |||||| |
|
|
| T |
53488758 |
ccaaagaagcagccaatgagattatattcaagtctatggaatgccgatgattgggcaacaagaggtggtcttgtgaaaacagattgg |
53488672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 168
Target Start/End: Original strand, 53492989 - 53493091
Alignment:
| Q |
66 |
ttcctttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa |
165 |
Q |
| |
|
|||| ||||| || |||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| || | || || || ||||||||||| |
|
|
| T |
53492989 |
ttccattccccaaaaaccaaccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaagacagattggtccaa |
53493088 |
T |
|
| Q |
166 |
agc |
168 |
Q |
| |
|
||| |
|
|
| T |
53493089 |
agc |
53493091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 53499286 - 53499383
Alignment:
| Q |
71 |
ttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagc |
168 |
Q |
| |
|
||||| || |||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| || | || || || |||||||||||||| |
|
|
| T |
53499286 |
ttccccaaaaaccaaccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaagacagattggtccaaagc |
53499383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 53502408 - 53502478
Alignment:
| Q |
71 |
ttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtgg |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||| || ||| | ||||| ||||||||||| |
|
|
| T |
53502408 |
ttcccaaagaaccaaccaatgagaatatattcaagtttgtggaatgcagataactgggcaacaagaggtgg |
53502478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 174
Target Start/End: Original strand, 52591022 - 52591134
Alignment:
| Q |
62 |
ggtattcctttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggt |
161 |
Q |
| |
|
||||||||||| || || | |||| ||||||| |||||||||||||| ||| | || ||| ||||||| ||||| || ||| | | |||||||||||||| |
|
|
| T |
52591022 |
ggtattccttttcctaaaagccaagcaatgagtatatattcaagtctttgggatgcagataattgggccacaaggggaggtctagcgaaaactgattggt |
52591121 |
T |
|
| Q |
162 |
ccaaagcaccatt |
174 |
Q |
| |
|
|| |||| ||||| |
|
|
| T |
52591122 |
cccaagccccatt |
52591134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 10411374 - 10411465
Alignment:
| Q |
80 |
aaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc |
171 |
Q |
| |
|
||||||||||||| ||||||| || | ||||| |||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| |
|
|
| T |
10411374 |
aaccaaccaatgaaaatatataatagcttatggaatgctgatgattgggctacaaggggtggtttggagaaaacagattggtccaaagcacc |
10411465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 10379826 - 10379765
Alignment:
| Q |
110 |
tggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc |
171 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||| | |||||| ||||||||||||||||| |
|
|
| T |
10379826 |
tggaatgctgatgattgggccacaaggggtggtttagagaaaacagattggtccaaagcacc |
10379765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 37188910 - 37189031
Alignment:
| Q |
61 |
tggtattcctttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattgg |
160 |
Q |
| |
|
|||| |||| ||||| || | ||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||| | || || || |||||| |
|
|
| T |
37188910 |
tggtgttccattccccaaaagccaaccaatgagaatctattctagtctttggaatgctgatgattgggctacaagaggtggacttgttaagacagattgg |
37189009 |
T |
|
| Q |
161 |
tccaaagcaccatttacagctt |
182 |
Q |
| |
|
||||| || || ||||| |||| |
|
|
| T |
37189010 |
tccaatgctccttttactgctt |
37189031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 32715057 - 32715121
Alignment:
| Q |
110 |
tggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatt |
174 |
Q |
| |
|
||||| || ||||||||||| |||||||||||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
32715057 |
tggaatgcagatgattgggccacaagaggtggtttggagaaaacagattggtcaaaagcaccatt |
32715121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 32709835 - 32709899
Alignment:
| Q |
110 |
tggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatt |
174 |
Q |
| |
|
||||| || ||||||||||| ||||||||||| || | |||||| |||||||||||||||||||| |
|
|
| T |
32709835 |
tggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcaccatt |
32709899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 32718435 - 32718499
Alignment:
| Q |
110 |
tggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatt |
174 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||| || | |||||||||||||| ||||||||||| |
|
|
| T |
32718435 |
tggaatgcagatgattgggccacaaggggtggattagaaaaaactgattggtcaaaagcaccatt |
32718499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 174
Target Start/End: Original strand, 16942648 - 16942756
Alignment:
| Q |
66 |
ttcctttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa |
165 |
Q |
| |
|
||||||| |||||||||||| | ||||| |||||||||||||| ||||| || ||| ||||||| || |||||||| | |||||||| |||||| |||| |
|
|
| T |
16942648 |
ttccttttccaaagaaccaagccatgaggatatattcaagtctttggaatgcagataattgggccactagaggtgggattgtgaaaacagattggaccaa |
16942747 |
T |
|
| Q |
166 |
agcaccatt |
174 |
Q |
| |
|
|| ||||| |
|
|
| T |
16942748 |
tgctccatt |
16942756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 174
Target Start/End: Original strand, 17013313 - 17013421
Alignment:
| Q |
66 |
ttcctttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa |
165 |
Q |
| |
|
||||||| |||||||||||| | ||||| |||||||||||||| ||||| || ||| ||||||| || |||||||| | |||||||| |||||| |||| |
|
|
| T |
17013313 |
ttccttttccaaagaaccaagccatgaggatatattcaagtctttggaatgcagataattgggccactagaggtgggattgtgaaaacagattggaccaa |
17013412 |
T |
|
| Q |
166 |
agcaccatt |
174 |
Q |
| |
|
|| ||||| |
|
|
| T |
17013413 |
tgctccatt |
17013421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University